Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00638 ATGAAAATGGGACTTCTTCAATGTCCCTTATCTTGCTACTCACAAAACCAACAACAACAAACACAATCTCACTCACATGATCATCACCTTAATTCAGAATCATCAACCTCTTCTTCTTTGTCTTCACAACCAAGTCTACCTTCTGTTCCTTCTCTCACCTCACAACCTTCTCAACAATCTCACTCACATGATCATCACCTTAATTCAGAATCATCAACCTCTTCTTCTCTGTCTTCACAACCAAGTCTACCTTCTGTTCCTTCTCTCACCTCACAACCTTCTCAACAATCTCAAACCACACATCACCAACTTCTAACAACCATCAAAGGCCACAATTCTCCTATCTTCTCCCTAACTCTTCACTCCAAATTCCTCTATAGTGCATCTTCCAATAGTGAAATAAGAAGGTTTAACAAAGACCCTTTTGCCCTTGAAGCCTCAAACAACACCAACAACAAATTAGTTGCCATAAGTAACAAATCAACCATAAAATCAATTATCATTCTCAATGATATGCTGTTTAGTGCTCATCAAGATCACAAAATCCGAGTTTGGAAAATCGAAACAAAAACAAAAAATAGTACTACCAATGATCAAGATCCTCAAAGCCTATTCAAATGCATAGCAACACTTCCAACTTTCAACGACCGATTTTCGAAGATTTTTTCGTCTAAGAATTATGTTGAAGTTAGAAGACATAAAAAGTGTACATGGGTTAATCATATTGACACTGTTTCTTCTCTTGCTGTTTCAAAAGATGAGTCTTTAATTTACTCTGCTTCATGGGACAGAACATTCAAAATTTGGAGAGTTTCTGATTTCAAGTGTTTGGAGTCAGTGAAAAATGCACATGAAGATGCTATCAATTCAATTGTTGTTTCTTCTGATGGGGTGGTTTATACAGGTTCAGCTGATAAAAAGATCAAAATTTGGAAGAAAAATCATAATCATAATGAAATTGAAAAAAGTGAAAAAAAGCACTTTTTGATTGGAACATTGGAGAAACATAGATCAGCTGTGAATGCTTTAGCACTTAACAAAAATGGGTCAATTTTATATTCAGGTGCTTGTGACAGATCAATTTTGGTTTGGGAAAAAAGTGATGATGAAAAAATGGTACTTGTTGGTGCACTTAGAGGGCATACAAAGGCTATATTGTGTTTGGTTGTGAATGATGATTTGGTGTGTAGTGGTTCAGCTGATAATAGTGTTAGGATATGGAGAAGAGGAATTGATGAAAAAAATTATAGTTGTTTGGGTGTTTTGCAAGGTCATAGAAAACCTGTTAAGTGTTTGGCTATGGCAGCAAATGATTCTAAAAGTAAGAGTGATGATGATAATTGTAATTCTTATCTTGTTTATAGTGGTAGTCTTGATTGTGATATTAAAGTTTGGAAAATACAAGTTCCTTTGTTTTGA 1419 0.3495 MKMGLLQCPLSCYSQNQQQQTQSHSHDHHLNSESSTSSSLSSQPSLPSVPSLTSQPSQQSHSHDHHLNSESSTSSSLSSQPSLPSVPSLTSQPSQQSQTTHHQLLTTIKGHNSPIFSLTLHSKFLYSASSNSEIRRFNKDPFALEASNNTNNKLVAISNKSTIKSIIILNDMLFSAHQDHKIRVWKIETKTKNSTTNDQDPQSLFKCIATLPTFNDRFSKIFSSKNYVEVRRHKKCTWVNHIDTVSSLAVSKDESLIYSASWDRTFKIWRVSDFKCLESVKNAHEDAINSIVVSSDGVVYTGSADKKIKIWKKNHNHNEIEKSEKKHFLIGTLEKHRSAVNALALNKNGSILYSGACDRSILVWEKSDDEKMVLVGALRGHTKAILCLVVNDDLVCSGSADNSVRIWRRGIDEKNYSCLGVLQGHRKPVKCLAMAANDSKSKSDDDNCNSYLVYSGSLDCDIKVWKIQVPLF 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00638 472 CDD WD40 104 466 - -
Car02g00638 472 ProSiteProfiles Trp-Asp (WD) repeats profile. 281 312 IPR001680 GO:0005515
Car02g00638 472 ProSiteProfiles Trp-Asp (WD) repeats profile. 238 279 IPR001680 GO:0005515
Car02g00638 472 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 374 IPR001680 GO:0005515
Car02g00638 472 SMART WD40_4 273 312 IPR001680 GO:0005515
Car02g00638 472 SMART WD40_4 371 408 IPR001680 GO:0005515
Car02g00638 472 SMART WD40_4 101 138 IPR001680 GO:0005515
Car02g00638 472 SMART WD40_4 231 270 IPR001680 GO:0005515
Car02g00638 472 SMART WD40_4 326 365 IPR001680 GO:0005515
Car02g00638 472 SMART WD40_4 415 466 IPR001680 GO:0005515
Car02g00638 472 SMART WD40_4 150 186 IPR001680 GO:0005515
Car02g00638 472 Gene3D - 228 319 IPR015943 GO:0005515
Car02g00638 472 ProSiteProfiles Trp-Asp (WD) repeats profile. 378 407 IPR001680 GO:0005515
Car02g00638 472 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 378 407 - -
Car02g00638 472 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 62 470 IPR045182 -
Car02g00638 472 Pfam WD domain, G-beta repeat 239 269 IPR001680 GO:0005515
Car02g00638 472 Pfam WD domain, G-beta repeat 375 407 IPR001680 GO:0005515
Car02g00638 472 Pfam WD domain, G-beta repeat 275 312 IPR001680 GO:0005515
Car02g00638 472 Pfam WD domain, G-beta repeat 330 364 IPR001680 GO:0005515
Car02g00638 472 Pfam WD domain, G-beta repeat 417 466 IPR001680 GO:0005515
Car02g00638 472 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 62 470 - -
Car02g00638 472 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 281 312 - -
Car02g00638 472 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 238 272 - -
Car02g00638 472 Gene3D - 320 470 IPR015943 GO:0005515
Car02g00638 472 MobiDBLite consensus disorder prediction 19 102 - -
Car02g00638 472 Gene3D - 94 225 IPR015943 GO:0005515
Car02g00638 472 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 333 365 - -
Car02g00638 472 SUPERFAMILY WD40 repeat-like 101 467 IPR036322 GO:0005515
Car02g00638 472 MobiDBLite consensus disorder prediction 32 62 - -
Car02g00638 472 MobiDBLite consensus disorder prediction 69 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00638 Car-Chr2 8191088 8193149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g00638 231 468 Miscellaneous Gene Families AT5G08390 23.140 1.32e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00638 - - cam:101511687 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00638 02 8191088 8193149 Car02g00638 02 8191088 8193149 ECH