Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g00605 ATGCTATGCTCTCTAATTTATTTGTGCCGTAAACCTTCCCTCTTTCAACACTTCACTAAGCGTTTCTATTCATCTTCATCCGCAGCCGCCTCCGCTGGTTTCTATTCATATTCATCCACAGCCTCTTCCGCCATGGTTGTTCACGCAAAGGATGAATCCTATCTAGCCGCCACAATCCCTAAACGCGTCCGTATCTTCGAATCGATTCAGGCGGAGCAGCAGATTCGCCGGCTTTCACTATCTGCGGATCCGATTAAAGTTACGCTTCCTGATGGAAGTGTAAAGGAAGGAAAGAAATGGCAAACTACTCCTTTGGACGTTGCTCGTGAAATCTCAAAAAATTTGGCCAATAATGCTCTCATTGCTAAGGTTAATGGTGTTCTTTGGGATATGACTCGTCCTCTCGAAGAGGATTCTCAACTTCAGATCTTTAGGTTTGATGATGATGAAGGGCGTGACACTTTTTGGCATTCTAGTGCTCACATTCTTGGCCAGTCACTTGAGACGGAGTATGGATGCAAGCTTTGCATTGGGCCTTGTACTACAAGAGGAGAGGGATTCTATTATGATGCTTTTTACGGTGACTTGGGTTTGAACGATGATCACTTTAAACAAATTGAGGCTGGGGCATTGAAGGCTGTTGCGGAAAAACAACCCTTTGAGCGCATTGAAGTGACACGTGATCAGGCGCTTGAGTTATTTTCTGAAAATAAGTTTAAGGTCGAAATTATCAATGATTTGCCTGCTGACAAGACTATCACAGTTTACAGATGTGGCCCCCTTGTTGATTTGTGCCGAGGACCACATATTCCTAATACATCCTTTGTCAAAGCAATTGCATGTTTGAAGGCTTCGTCGGCATATTGGAGGGGGGACAAAGATAGAGAAAGTTTACAAAGAGTTTATGGCATATCTTATCCTGATCAGAAGAGTTTAAAGGAATATTTGCATCGGCTTGAAGAGGCTAAAAAGTATGATCACAGGATTTTGGGAGTGAAACAGGAGCTTATTCTTCATCATGAATGGAGcccgggaagttggttttttcttccacatggtgcacgaatctacaacacactcatgaacttcatccgaaatcaatacagacacaggggctatcaagaggttattaccccaaatgtcttcaacatggaactgtgggtgacatctggtcatgcggcaaattataaagaggatatgtttgtcttagagattgacaaacaagagtttggactgaaaccgatgaattgcccaggacactgcttgatgtttaaacacagggttcggtcctatagagaacttcctcttcgttttgcagattttggggttttgcatcggaatgaggccagtggtgccctgagtggattaacacgtgttaggagatttcagcaggatgatgcacatattttctgcagggagtctcagataaaggatgaagtcagaaaagccttgaacttcatcaattatgtctatcaaatatttggtttcacatatgaactaaaactttcaacgaggccagagaaataccttggagacatcgaaacatgggagaaagctgaaaattctctcaaagaagctttggatgagtttggcaaaccatggcagttgaatgaaggggatggagcattctatggaccaaagatagatatcagtgtatctgatgcATTGAGTAGGAAATTCCAATGTGCAACTCTACAGCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCTGCTGAGGATGAAGCCAAAATTGAGAGACCTGTTATGATACACAGAGCCATTCTAGGATCTGTTGAACGCATGTTTGCCATACTTTTAGAGCACTACAAGGGTAAATGGCCCTTTTGGCTCAGTCCTCGCCAAGCAATTCTGTGCCCTGTGTCTGAGAAATCACAAGCTTATGCACTGAAGGTACGTGATCAGATTCACCAAGCAGGATATCACGTAGATGCTGATACAACTGATAGGAAGATTCAAAAGAAGGTACGAGAAGCTCAACTAGCACAATACAACTACATCTTGGTTGTTGGAGAAGAGGAAGCTAATACAGGACAGGTGAGTGTACGAGTCAGGGATAAGGCAGACCATAGTGTTATGAGTATTGAGAACTTACTCAAACACTTCGAAGACGAAGTTGCAGCTTTCCACTGA 2160 0.3042 MLCSLIYLCRKPSLFQHFTKRFYSSSSAAASAGFYSYSSTASSAMVVHAKDESYLAATIPKRVRIFESIQAEQQIRRLSLSADPIKVTLPDGSVKEGKKWQTTPLDVAREISKNLANNALIAKVNGVLWDMTRPLEEDSQLQIFRFDDDEGRDTFWHSSAHILGQSLETEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNDDHFKQIEAGALKAVAEKQPFERIEVTRDQALELFSENKFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEYLHRLEEAKKYDHRILGVKQELILHHEWSPGSWFFLPHGARIYNTLMNFIRNQYRHRGYQEVITPNVFNMELWVTSGHAANYKEDMFVLEIDKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQIKDEVRKALNFINYVYQIFGFTYELKLSTRPEKYLGDIETWEKAENSLKEALDEFGKPWQLNEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPDRFKLEFSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAILCPVSEKSQAYALKVRDQIHQAGYHVDADTTDRKIQKKVREAQLAQYNYILVVGEEEANTGQVSVRVRDKADHSVMSIENLLKHFEDEVAAFH 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g00605 719 PANTHER THREONINE-TRNA LIGASE 48 718 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Car02g00605 719 Gene3D Bira Bifunctional Protein; Domain 2 308 615 IPR045864 -
Car02g00605 719 Pfam TGS domain 85 144 IPR004095 -
Car02g00605 719 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 253 302 IPR012947 GO:0004812|GO:0005524|GO:0043039
Car02g00605 719 CDD ThrRS_core 326 622 IPR033728 -
Car02g00605 719 SUPERFAMILY Class II aaRS and biotin synthetases 326 609 IPR045864 -
Car02g00605 719 CDD ThrRS_anticodon 622 712 - -
Car02g00605 719 Hamap Threonine--tRNA ligase [thrS]. 150 717 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Car02g00605 719 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 351 617 IPR006195 -
Car02g00605 719 PANTHER THREONINE--TRNA LIGASE, CYTOPLASMIC 48 718 - -
Car02g00605 719 Gene3D - 83 144 IPR012675 -
Car02g00605 719 SUPERFAMILY Class II aaRS ABD-related 610 715 - -
Car02g00605 719 SUPERFAMILY TGS-like 85 145 IPR012676 -
Car02g00605 719 ProSiteProfiles TGS domain profile. 83 145 IPR004095 -
Car02g00605 719 PRINTS Threonyl-tRNA synthetase signature 412 440 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Car02g00605 719 PRINTS Threonyl-tRNA synthetase signature 445 468 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Car02g00605 719 PRINTS Threonyl-tRNA synthetase signature 546 574 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Car02g00605 719 PRINTS Threonyl-tRNA synthetase signature 590 603 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Car02g00605 719 PRINTS Threonyl-tRNA synthetase signature 617 629 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Car02g00605 719 Pfam Anticodon binding domain 624 712 IPR004154 -
Car02g00605 719 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 405 612 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Car02g00605 719 SMART tRNA_SAD_4 253 302 IPR012947 GO:0004812|GO:0005524|GO:0043039
Car02g00605 719 CDD TGS_ThrRS 85 150 - -
Car02g00605 719 Gene3D - 616 718 IPR036621 -
Car02g00605 719 Gene3D - 148 306 - -
Car02g00605 719 TIGRFAM thrS: threonine--tRNA ligase 156 714 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Car02g00605 719 SUPERFAMILY ThrRS/AlaRS common domain 147 324 IPR018163 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g00605 Car-Chr2 7258438 7269990 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g00605 K01868 - gmx:100812652 1308.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g00605 02 7258438 7269990 Car02g00605 02 7258438 7269990 ECH