Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02657 ATGCCAACAATTTTGCTTAGGATTTTCCTTCTATACAACGTTGTCAATTCATTTCTCATATCTCTTGTACCTAAGAAACTCCGAACTTTCTTCCCACATTCTTGGTTCTCCCATCAAACCTTAAAAACCAATCTCAACACTACTACACTTTCTTCATCAAAAAAAGGTTTTGTTGTTATTACCAAAAGTATaacaatggatccaaatgaactcaaacgtgttttccaaatgttcgaccgtaacgatgacggtcgaataacaaagaaagagctaaatgattcattggagaatttaggaattttcatacctgacaaagagctaagtcaaatgatcgagaagatcgatgtgaacagagacgggtgtgtggacattgaagagtttagagAGTTGTATGAGTCAATTATGAATGGCCGTGAAGAAGAGGAGGAAGAAGATATGAGAGAAGCATTCAATGTGTTTGATCAAAATGGTGATGGATTTATAAGTGTTGAAGAGTTGAGATCGGTTTTGGTTACTTTGGGATTGAAACAAGGAAGAACTGTTGAAGATTGTAAGAAGATGATTGGGAAGGTTGATGTTGATGGAGATGGATTGGTTGATTATAAGGAGTTTGTGCAAATGATGAAGGGTGGTGGATTCACTGCTCTCAGTTAA 654 0.2538 MPTILLRIFLLYNVVNSFLISLVPKKLRTFFPHSWFSHQTLKTNLNTTTLSSSKKGFVVITKSITMDPNELKRVFQMFDRNDDGRITKKELNDSLENLGIFIPDKELSQMIEKIDVNRDGCVDIEEFRELYESIMNGREEEEEEDMREAFNVFDQNGDGFISVEELRSVLVTLGLKQGRTVEDCKKMIGKVDVDGDGLVDYKEFVQMMKGGGFTALS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02657 217 ProSitePatterns EF-hand calcium-binding domain. 79 91 IPR018247 -
Car01g02657 217 PANTHER BNAA04G25000D PROTEIN 6 215 - -
Car01g02657 217 Gene3D - 38 135 - -
Car01g02657 217 Gene3D - 136 211 - -
Car01g02657 217 ProSiteProfiles EF-hand calcium-binding domain profile. 102 137 IPR002048 GO:0005509
Car01g02657 217 ProSitePatterns EF-hand calcium-binding domain. 115 127 IPR018247 -
Car01g02657 217 ProSitePatterns EF-hand calcium-binding domain. 192 204 IPR018247 -
Car01g02657 217 ProSiteProfiles EF-hand calcium-binding domain profile. 66 101 IPR002048 GO:0005509
Car01g02657 217 ProSiteProfiles EF-hand calcium-binding domain profile. 179 214 IPR002048 GO:0005509
Car01g02657 217 CDD EFh 145 209 IPR002048 GO:0005509
Car01g02657 217 Pfam EF-hand domain pair 70 132 IPR002048 GO:0005509
Car01g02657 217 Pfam EF-hand domain pair 143 209 IPR002048 GO:0005509
Car01g02657 217 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 6 215 - -
Car01g02657 217 Coils Coil 124 144 - -
Car01g02657 217 SUPERFAMILY EF-hand 69 210 IPR011992 -
Car01g02657 217 ProSitePatterns EF-hand calcium-binding domain. 154 166 IPR018247 -
Car01g02657 217 SMART efh_1 106 134 IPR002048 GO:0005509
Car01g02657 217 SMART efh_1 70 98 IPR002048 GO:0005509
Car01g02657 217 SMART efh_1 183 211 IPR002048 GO:0005509
Car01g02657 217 SMART efh_1 145 173 IPR002048 GO:0005509
Car01g02657 217 ProSiteProfiles EF-hand calcium-binding domain profile. 141 176 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02657 Car-Chr1 52135219 52136682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02657 5 215 EF-hand Containing Proteins AT2G43290 64.019 8.58e-97 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02657 K13448 - gmx:100527487 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02657 01 52135219 52136682 Car06g03690 06 68675383 68676444 PCT