Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02562 ATGGCTGCTCGACCAGCAAAGCCTCGTGCCGGTGCTGATCCCGATTATCTCATAAAGCTTCTTTTGATCGGAGATAGTGGTGTTGGAAAGAGTTGCCTTCTTCTACGATTCTCCGATGGTTCTTTCACAACTAATTTTATTACAACCTTAGGCATTGATTATAAAAATAGAGCCATTCAGCTGGATGGAAAAAAGATGATGATCCAAGTTTGGGATACTGCAGGTCAGGAGCGGTTCCGAACAATTACAAATACTTACTATCGCGGTGCTATGGGAGTATTGCTAGTCTACGATGTTACTGACGAATTTTCATTTAACAATATCAAAAATTGGATGCATAGCATTGAGCAATATGCTTCCGACAATGTCAACAAAATACTGGTTGGGAACAAAGCTGACATGAATGAAAGGAAAAGGGCCGTGCCTACCTCTAAGGGCCAAGCACTAGCCGACGAGTATGGAATCAAATTTTTCGAAACAAGTGCAAAGACAAATTTAAATGTGGACAAAGTTTTCTTCTCGATTGTGAAAGATATAAAACGAAGGCTTGATGACATTGACTCGAAGACACCACCGATAGGAATTAGAATCAACAGACAAAATCAGGCAAACGGAGCGTGGAATGCACAGAAGTTGGCGTGCTGTGGTTAA 651 0.4132 MAARPAKPRAGADPDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTNFITTLGIDYKNRAIQLDGKKMMIQVWDTAGQERFRTITNTYYRGAMGVLLVYDVTDEFSFNNIKNWMHSIEQYASDNVNKILVGNKADMNERKRAVPTSKGQALADEYGIKFFETSAKTNLNVDKVFFSIVKDIKRRLDDIDSKTPPIGIRINRQNQANGAWNAQKLACCG 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02562 216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 215 IPR027417 -
Car01g02562 216 ProSiteProfiles small GTPase Rab1 family profile. 13 215 - -
Car01g02562 216 TIGRFAM small_GTP: small GTP-binding protein domain 16 172 IPR005225 GO:0005525
Car01g02562 216 Gene3D - 12 215 IPR027417 -
Car01g02562 216 SMART ras_sub_4 19 182 - -
Car01g02562 216 SMART ran_sub_2 23 216 - -
Car01g02562 216 Pfam Ras family 19 180 IPR001806 GO:0003924|GO:0005525
Car01g02562 216 PANTHER BNAA07G37610D PROTEIN 1 215 - -
Car01g02562 216 SMART rab_sub_5 18 182 - -
Car01g02562 216 ProSiteProfiles small GTPase Ras family profile. 6 213 IPR001806 GO:0003924|GO:0005525
Car01g02562 216 SMART rho_sub_3 20 182 IPR001806 GO:0003924|GO:0005525
Car01g02562 216 PANTHER LD44762P 1 215 - -
Car01g02562 216 PRINTS Transforming protein P21 ras signature 18 39 - -
Car01g02562 216 PRINTS Transforming protein P21 ras signature 41 57 - -
Car01g02562 216 PRINTS Transforming protein P21 ras signature 59 81 - -
Car01g02562 216 PRINTS Transforming protein P21 ras signature 121 134 - -
Car01g02562 216 PRINTS Transforming protein P21 ras signature 157 179 - -
Car01g02562 216 ProSiteProfiles small GTPase Rho family profile. 11 188 - -
Car01g02562 216 CDD Rab8_Rab10_Rab13_like 15 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02562 Car-Chr1 51363998 51366382 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02562 K07901 - twl:120002676 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02562 01 51363998 51366382 Car01g02562 01 51363998 51366382 ECH
Car06g03569 06 66916008 66920818 Car01g02562 01 51363998 51366382 ECH
Car01g02562 01 51363998 51366382 Car06g03569 06 66916008 66920818 PCT