Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02228 ATGAGATCAAGCTATGTTTCAGTTACGACAAACCAAACAACAACGTTAACATTAGACAAATACACAACACTGTCCCAATTGCGCCAAATTCACGCACACATCATCAAAACAAACCTCATCACTCACCCAATCTCTGTCTCCAAACTCATCAACGCTTTCTCTCGTAGCTCAAATCCCTATGAAGCCGTTACCCTTTACGCCCACGCGCTCTCTCGTTTCAACAACTTGCGTGGATTCCACTTCTGTGTTCCACCAGCTCTCAGAGCCTGTGGTAGATCCAATGCATTAGAGGAAGGGAAACAAATCATGGGTTTCGTTTTCAAAACGCGTGATTTGTGGCATGACCCTTTTGTTACTAATTCAGTAGTTCGAATGTGtttggaaattggtttgattaagcttgcaaggtcggtgtttgataaaatgcctgtaagagatttgatttcttggaactctttgcttactggttatttaagggctggtgagattgagatggctcgtgaggtttttgatgaaatgcctcaaaaggatgttgtttcttgtaatgctatgattgatgggtatgggaagaatgggaaatgtgagcttgctgaggaggtttttatggatatgagtttaagagatgtggttacgtggtcgagtatgatttctgcttttgtTCTTAATGGTCGACCAAGGAAAGGTTTGGACTTGTTTAGAGAAATGTTGACTTTAGGGGTTAGACCTGATGCACCTGTTATTGTTGGTGTTCTTTCAGCTATTGCTGAATTGGGTTTTGTTGAGGAAGGGAAATGGATACACAGTTATGTGTTTAGTAATAAGATACATTATAGTTGTAGTTTTATTGGATCAGCACTTGTTAACATGTATGCTAAATGTGGCCAAATAGCAAATGCTTATAGTGTATTTAGAAGCATTTGTAACCGGAGGAATGTTGGGGATTGGAATTCTTTGATCTCTGGACTCGCTTTGCATGGAATGGGTCGTGAAGCGATCAAGGTTTTTCTGGAATTGGAAAGGGAAGGACTTAAGCCTGATGATATAACTTTTTTAGGGCTTTTAAGTGCTTGCAACCATGGTGGACTTGTGGAGGAGGGTCAATTTTACTATGAAACCATGCAAGTGAAGTACAACATAGTTCCGAAAATTCAGCATTGTGGGTGCATTGTTGACCTTCTTAGTCGAGCGGGTCGATTAGAAGAGGCGCTTAGGATTATAAGTGATATGTCTTTGGAGCCAGATGTTTTGATATGGAAGAATATTCTCAGTGCTTGTTTGAAGCACAATAACTCTGTAATGGGGAAAACAGCTGCATTGAAAGCTATAGAATTGGCTCCAGAGGATTCAAGTTGTTATGTTCTTCTCTCAAATATCTATGCCAAAGAAGGTAGTTGGGATGAAGTGACTAAGGTTAGATCAATGATGAGAAAAAGGGGCATAAGAAAAGTTCCGGGATGTAGCTCCATTCTTGTTGATGGTAAAGTCCATGAGTTCCTCGTCGGGAAGGCCATGGACATGAGTTATGATCAAAATGTTCTATCTAAGTTGGAGGAGGTTGTGTCTGAGTTGAAGACGGAGGGATATGAACCTGATCTCAATCAAGTTTTTTTAGATGTTGAAGACGATGAAAAAGAGAACCAACTGATTCTTCACAGTGAGAAGATGGCTCTTGCCTTTGGACTGTTGAGTACCCCACAGGGAATTCCTATTTACATAGTGAAAAACTTGAGAATTTGTTGTGATTGTCACACATTCATGCAGCTGGTTTCAAAAGTCTACAACCGTCGAGTTATTGTGAGAGATCAAAACCGTTTTCATCATTTTGATAGAGTAAAAGCAATAAATAGTTTAGAATGCAGCAGTCCTCCACCAAAAACATGTGGATCCAATATCCTTCAATTACTTCACCTAGCTAGAATGAAACTCAGTGATGGGAGACATTTGGCTTACCAGGAGTTTGGTTTTCCAAAGGAAGAAGCTAGGTACAAGATCATTGTTGTTCATGGATATGGCAGTTCCAAAGATACACATTTGCCTGTTTCTCAAGAATTGATAGATGAATTGAGTATTTATCTTGTGCAATATGACCGGGCTGGATATGGAGAAAGTGATCCAAACCCGAAACGCTCATTGAAAAGTGAAGCACTTGATATTGAAGAGCTTGCTGATAAGCTACAAATAGGAGCACATTTTTATGTAATTGGAGTCTCAATGGGTTCATATGCAGCATGGAGTTGTCTAAAATATTTCCCCCACAGGCTTGCAGGGTTGGCACTAATAGCTCCAGTTATAAATTATAGATGGCCTTCTCTCCCTGTGAGTCTGGTAAGAGAGGATTATAGAAGGAAATTTATTAGATGGGCATTGTGGCTTGCAAATCACTGTCCTAAACTATTGCATTGGTGGGTCACTCAAAAGTGGCTCCCTTCAACTGCTGTCATAGAAAAAAACCACACACTCTTCAACAAAAATGATATAGATATTTTGAAGACTATTCCAGGGTTCCCAATGTTTTCAAAGGACAGGTTAAGGGAACAAGTTGTTTTCGACACTCTCCGCCATGATTGGAAGGTAGCTTTTGGAAAATGGGAATTTGATCCAATGATGTTAAGCAATCCATTTCCTCACAAACAAAGTTCATTTCACATTTGGCAAGGATATGAAGATAAAGTTGTGCCTTCTGAACTACAGAGATTTGTTTCAGGAAAACTGCCTTGGATACAATATCATGAAATACCAGATGGTGGTCATTTAATTGTATACTATAAGGGCTTGTGTGAGGCTATTTTGAGAGCACTTTTACTTGGTCAAGAAAATCATGCATATAGACCTAGGTCATCTTTATTATTCAAAGAGGAGTGCTATCAGGAAACTATTTAA 2880 0.3576 MRSSYVSVTTNQTTTLTLDKYTTLSQLRQIHAHIIKTNLITHPISVSKLINAFSRSSNPYEAVTLYAHALSRFNNLRGFHFCVPPALRACGRSNALEEGKQIMGFVFKTRDLWHDPFVTNSVVRMCLEIGLIKLARSVFDKMPVRDLISWNSLLTGYLRAGEIEMAREVFDEMPQKDVVSCNAMIDGYGKNGKCELAEEVFMDMSLRDVVTWSSMISAFVLNGRPRKGLDLFREMLTLGVRPDAPVIVGVLSAIAELGFVEEGKWIHSYVFSNKIHYSCSFIGSALVNMYAKCGQIANAYSVFRSICNRRNVGDWNSLISGLALHGMGREAIKVFLELEREGLKPDDITFLGLLSACNHGGLVEEGQFYYETMQVKYNIVPKIQHCGCIVDLLSRAGRLEEALRIISDMSLEPDVLIWKNILSACLKHNNSVMGKTAALKAIELAPEDSSCYVLLSNIYAKEGSWDEVTKVRSMMRKRGIRKVPGCSSILVDGKVHEFLVGKAMDMSYDQNVLSKLEEVVSELKTEGYEPDLNQVFLDVEDDEKENQLILHSEKMALAFGLLSTPQGIPIYIVKNLRICCDCHTFMQLVSKVYNRRVIVRDQNRFHHFDRVKAINSLECSSPPPKTCGSNILQLLHLARMKLSDGRHLAYQEFGFPKEEARYKIIVVHGYGSSKDTHLPVSQELIDELSIYLVQYDRAGYGESDPNPKRSLKSEALDIEELADKLQIGAHFYVIGVSMGSYAAWSCLKYFPHRLAGLALIAPVINYRWPSLPVSLVREDYRRKFIRWALWLANHCPKLLHWWVTQKWLPSTAVIEKNHTLFNKNDIDILKTIPGFPMFSKDRLREQVVFDTLRHDWKVAFGKWEFDPMMLSNPFPHKQSSFHIWQGYEDKVVPSELQRFVSGKLPWIQYHEIPDGGHLIVYYKGLCEAILRALLLGQENHAYRPRSSLLFKEECYQETI 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02228 959 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 5 605 - -
Car01g02228 959 Pfam PPR repeat family 311 357 IPR002885 -
Car01g02228 959 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Car01g02228 959 Pfam E motif 428 489 IPR046848 -
Car01g02228 959 Gene3D Tetratricopeptide repeat domain 280 447 IPR011990 GO:0005515
Car01g02228 959 Gene3D Tetratricopeptide repeat domain 42 176 IPR011990 GO:0005515
Car01g02228 959 Pfam DYW family of nucleic acid deaminases 527 610 IPR032867 GO:0008270
Car01g02228 959 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 482 IPR002885 -
Car01g02228 959 Gene3D alpha/beta hydrolase 637 923 IPR029058 -
Car01g02228 959 Gene3D Tetratricopeptide repeat domain 177 265 IPR011990 GO:0005515
Car01g02228 959 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Car01g02228 959 Pfam Alpha/beta hydrolase family 664 919 IPR000073 -
Car01g02228 959 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Car01g02228 959 Pfam PPR repeat 179 206 IPR002885 -
Car01g02228 959 Pfam PPR repeat 210 240 IPR002885 -
Car01g02228 959 Pfam PPR repeat 148 177 IPR002885 -
Car01g02228 959 Pfam PPR repeat 388 409 IPR002885 -
Car01g02228 959 PANTHER - 5 605 - -
Car01g02228 959 SUPERFAMILY alpha/beta-Hydrolases 640 921 IPR029058 -
Car01g02228 959 TIGRFAM PPR: pentatricopeptide repeat domain 148 178 IPR002885 -
Car01g02228 959 TIGRFAM PPR: pentatricopeptide repeat domain 315 346 IPR002885 -
Car01g02228 959 TIGRFAM PPR: pentatricopeptide repeat domain 179 209 IPR002885 -
Car01g02228 959 TIGRFAM PPR: pentatricopeptide repeat domain 210 244 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02228 Car-Chr1 48118531 48126397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02228 59 608 Glycoside Hydrolase AT3G49170 33.555 5.05e-98 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02228 - - gmx:102664046 932.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02228 01 48118531 48126397 Car06g03364 06 63001924 63005536 PCT