Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02162 ATGTCTCAATTACTGTCTCCTGTGTACACGGAAGCTCTCAAAATCCAAAACACATCACTGAATTTGTGTTCAAAAAGCTCATGGAAGAAGCCAGATAAGGTTGCAAATCCTTGTACTTTAGTTATGCAAAGTGGTAAGAGAAAAGAGTGTAGGAGGGTAAGAGTTTCTGCTGAGGATTCAGTTTCTCCCATTGATTCTTCTGCAGATGACTATTATGCAGTTCTTGGTCTGCTTCCAGATGCAACACCAGAGGAGATCAAGAAGGCATACTATGATTGCATGAAAGCTTGTCACCCGGACTTGAGTAGCAATGATCCTGAGACCACTAATTTCTCCATGTTTGTCAATGAAGTCTATGCAGTGCTCAGTGATCCGATCCAGCGGAAGGTTTATGATGAAATTCATGGATATTCTTTATCTTCAATCAATCCTTTCTTGGATGATTCTATCTCAAAGGATCATGTTTTTGTTGATGAGTTCAGCTGCATAGGCTGCAAAAATTGTGCCAATGTAGCATCTGATGTGTTTGCAATAGAGGAAGACTTTGGAAGAGCCAGAGTATTCAGCCAACACGGAAACCCTGAATTAGTTCAACAGGCAATTGAGAGTTGCCCTGTTGACTGTATTCATTGGACATCTGCTGCACAACTATCATTACTCGAAGATGAAATGCACCGTATAGAAAGAGTCAACGTTGCTCTAATGCTTTCAGGAATGGGATCAGCTTCATTTGATGTTTTCAGAATGGCGAGTTCGCGATGGGAAAAGAGACAGTCAAAAGTCTTGAGGATGAAGTTAAAGAAAGAGCAAAAAGAGCTGCTGCGGCGGCACGACGATGGAGGGAATACTCAAGGAAGGGTGTTGATAAGCCTCCTAAATTTAAACTTCCAGAGGCAAGCCCCTAACAAGGACAAGTGA 918 0.4194 MSQLLSPVYTEALKIQNTSLNLCSKSSWKKPDKVANPCTLVMQSGKRKECRRVRVSAEDSVSPIDSSADDYYAVLGLLPDATPEEIKKAYYDCMKACHPDLSSNDPETTNFSMFVNEVYAVLSDPIQRKVYDEIHGYSLSSINPFLDDSISKDHVFVDEFSCIGCKNCANVASDVFAIEEDFGRARVFSQHGNPELVQQAIESCPVDCIHWTSAAQLSLLEDEMHRIERVNVALMLSGMGSASFDVFRMASSRWEKRQSKVLRMKLKKEQKELLRRHDDGGNTQGRVLISLLNLNFQRQAPNKDK 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02162 305 CDD DnaJ 70 124 IPR001623 -
Car01g02162 305 Gene3D - 153 213 - -
Car01g02162 305 Pfam DnaJ domain 70 132 IPR001623 -
Car01g02162 305 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 153 181 IPR017896 -
Car01g02162 305 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 268 - -
Car01g02162 305 Pfam 4Fe-4S single cluster domain of Ferredoxin I 157 211 - -
Car01g02162 305 SMART dnaj_3 69 127 IPR001623 -
Car01g02162 305 Gene3D DnaJ domain 53 146 IPR036869 -
Car01g02162 305 PRINTS DnaJ domain signature 72 90 IPR001623 -
Car01g02162 305 PRINTS DnaJ domain signature 90 105 IPR001623 -
Car01g02162 305 PRINTS DnaJ domain signature 107 127 IPR001623 -
Car01g02162 305 ProSiteProfiles dnaJ domain profile. 70 135 IPR001623 -
Car01g02162 305 SUPERFAMILY Chaperone J-domain 65 134 IPR036869 -
Car01g02162 305 SUPERFAMILY 4Fe-4S ferredoxins 154 211 - -
Car01g02162 305 PANTHER OS01G0730500 PROTEIN 1 268 - -
Car01g02162 305 PRINTS 3Fe-4S ferredoxin signature 157 168 IPR001080 GO:0005506|GO:0009055
Car01g02162 305 PRINTS 3Fe-4S ferredoxin signature 168 178 IPR001080 GO:0005506|GO:0009055
Car01g02162 305 PRINTS 3Fe-4S ferredoxin signature 197 209 IPR001080 GO:0005506|GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02162 Car-Chr1 47276386 47279973 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02162 - - gmx:100786494 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02162 01 47276386 47279973 Car01g02162 01 47276386 47279973 ECH