Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02136 ATGGGGATGAGGAATGATGGACAAAAACAACAGCTTATTCATCAAGGTGTTGGTGTTGCAGCTGCTGGTGGTGGAAAAACCAATGGTTTCATTCCTAGCTCCTTTCGCGCTATCTCAAGCTACTTGAGGATTGTTTCCTCTGGTGCTTCCACCGTTGCGCGCTCTGCTGCATCGGTTGCTTCATCAATTGTTGATAGGGACGATGTTTCTGATCATGATCAGGTTATCTGGGCTGGGTTTGATAAGTTGGAGGGTGAGGGTGGTGTCGTTCAGCAAGTACTTCTTCTAGGCTATCGATCTGGTTTCCAGGTTTGGCATGTTGATGAATCAAATAATGTCCGGGACCTGGTTTCCAAACATGATGGTCCTGTTTCTTTTATGCAAATGGTTCCGAATCCAATTGCATCGAAAAAATCAGAAAACAAGTTAATAAGTGGCCGCCCGCTGTTGGTAGTTTGTGTGGATGGGTTCTTCGCAGGAGGATGCAATGTTAAGGACGGTTTGAACGGATCTTCCAATGGGACCACTTCAAACTCCCATGACCAAATGAATAGCAACTATATGCCAACTACTGTTCAGTTTTATTCTATGAAATCTCACTCATATGTTCATGTAATGAAGTTTAGATCTGTTGTTTATTCTGTAAGGTGCAGTTCTCGAATAGTTGCTGTTTCTCAATCCACTCAGATACACTGTTTTAATGCTACAACATTAGAAAGGGAATATACTTTACTTACCAATCCAATAGTCCTGAGTTGTCCTGGTTCTGGTGGCATAGGCTATGGACCACTTGCAGTTGGTCCAAGATGGCTAGCTTATAGTGGAAGTCCGGTTGCAGTCTCCACTTCTGGCCATGTCAGCCCGCAACATTTGATGCCTTCTGCAAGCTTCCCTGGTTTTTCTTCAAATGGAAGCTTGATTGCACACTATGCCAAAGAGTCAAGCAAGCAGCTTGCTTCTGGGATTGTGACCCTTGGCGATATGGGATATAAGAAACTTTCTAGATACTGCTCTGATAACAATGGTTCACTACAATCTGGAAGTTCTGGATCAAAGGGCAGTGGAACTATTAATGGCCATTCGGCAGATGCAGACAACGTTGGAATGGTCATTGTTAAAGATATTGTCACTAAAAACGTTATCGCACAATTCCAGGCCCACAAGAGTCCCATTTCAGCGTTATGCTTTGATCCTAGTGGCACCATATTAGTGACTGCTTCTGTTCAGGGTCATAACATAAATGTTTTTAAGATAATGCCTACGCGTGAGAATTCTTCAGCATCTGATGCTGGTCCTTCTCACGTTCATTTATACAGGCTGCAACGCGGTTTTACAAATGCGGTTATACAAGATATCAGTTTCAGTGATGACAGCAAGTGGATTATGATTAGTTCCTCAAGGGGCACAAGCCATCTGTTTGCCATTAATCCTCAAGGAGGATACGTAAATATTCAGTCTAATGATGATAGTCTTACTACGAAAAATAGCGGATTAAGCACTATGCCTAATCAAGCTGTTCGCCGAGCTCCCATGTCATCCGTACAAATGCCTAAACAGCAAAGCCTCTATGTAGCTGACCCTCCAATAACACTTTCTGTAGTAAGCAGAATTAGGAGTGGAACTAATGGTTGGAGAGGCACCGTAACTGGTGCTGCTGCAGCTGCAACTGGTAGGAAGAGTTCCGTTTCTGGAGCTATTGCTTCGTGTTTCCGTAGTTGTAAAGGAAGTGGAGCAATGTATGGTGAAGGTACCCATTCGAAGGAAAATCATCATGTATTGGTCTTTTCACCTAGTGGATCGATGATACAGTATGCTCTTCGGACGATAACTGGTCAAGATTCTGCTGTTGTTTCTGGATTGTCCCCTGCTTATGAGTTTGTTCCACAGGCCGATGCAAGATTAGTAGTTGAGGCCATGCATAAATGGAATATATGTCATAGTCATAATCGGAGAGAGCGAGAAGATAATGTTGACATCTATGGCGAAAATGGAATTTCCGACAACAATAAAATATATCCCGAGGAAGTAGAGGAGAACGTTGTTCACCCTAAGATAAAAAATGGAGTCACAAAAGTGAATTCCTGTCTGGAGGACGGTCATCATTTGTATATTTCAGAAGCTGAACTGCAAATGCACCAAGCTCAGGTTCCGCCGTGGGCAAAGCCCAAGATATATTTTAATTCAATGATGAAAAAGTCCACCATAATGGATGAAGAAGCTGCTTCAGGAGGAGAATTTGAGATTGAAAGGATCCCAACTTGCATGAGTGAAGCTAGACCAAAAGACTTGGTTCCAATTGTCAACTATATGCAGACCCCAAAATCACAACAAACAAGGCATGGAAATATTCTTTGA 2355 0.4276 MGMRNDGQKQQLIHQGVGVAAAGGGKTNGFIPSSFRAISSYLRIVSSGASTVARSAASVASSIVDRDDVSDHDQVIWAGFDKLEGEGGVVQQVLLLGYRSGFQVWHVDESNNVRDLVSKHDGPVSFMQMVPNPIASKKSENKLISGRPLLVVCVDGFFAGGCNVKDGLNGSSNGTTSNSHDQMNSNYMPTTVQFYSMKSHSYVHVMKFRSVVYSVRCSSRIVAVSQSTQIHCFNATTLEREYTLLTNPIVLSCPGSGGIGYGPLAVGPRWLAYSGSPVAVSTSGHVSPQHLMPSASFPGFSSNGSLIAHYAKESSKQLASGIVTLGDMGYKKLSRYCSDNNGSLQSGSSGSKGSGTINGHSADADNVGMVIVKDIVTKNVIAQFQAHKSPISALCFDPSGTILVTASVQGHNINVFKIMPTRENSSASDAGPSHVHLYRLQRGFTNAVIQDISFSDDSKWIMISSSRGTSHLFAINPQGGYVNIQSNDDSLTTKNSGLSTMPNQAVRRAPMSSVQMPKQQSLYVADPPITLSVVSRIRSGTNGWRGTVTGAAAAATGRKSSVSGAIASCFRSCKGSGAMYGEGTHSKENHHVLVFSPSGSMIQYALRTITGQDSAVVSGLSPAYEFVPQADARLVVEAMHKWNICHSHNRREREDNVDIYGENGISDNNKIYPEEVEENVVHPKIKNGVTKVNSCLEDGHHLYISEAELQMHQAQVPPWAKPKIYFNSMMKKSTIMDEEAASGGEFEIERIPTCMSEARPKDLVPIVNYMQTPKSQQTRHGNIL 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02136 784 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 3 780 IPR045142 GO:0006914
Car01g02136 784 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 3 780 - -
Car01g02136 784 Pfam Breast carcinoma amplified sequence 3 527 765 IPR022175 -
Car01g02136 784 SMART WD40_4 199 234 IPR001680 GO:0005515
Car01g02136 784 SMART WD40_4 377 417 IPR001680 GO:0005515
Car01g02136 784 SMART WD40_4 433 474 IPR001680 GO:0005515
Car01g02136 784 SUPERFAMILY WD40 repeat-like 92 476 IPR036322 GO:0005515
Car01g02136 784 Gene3D - 88 493 IPR015943 GO:0005515
Car01g02136 784 Pfam WD domain, G-beta repeat 381 410 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02136 Car-Chr1 46925077 46935620 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02136 - - gmx:100792344 1184.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02136 01 46925077 46935620 Car01g02136 01 46925077 46935620 ECH