Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02127 ATGGCAGGAAGAGGCAAAACCCTAGGATCCGGTGCCGCTAAGAAAGCCACATCAAGGAGTAGCAAAGCTGGTCTCCAATTTCCCGTTGGACGTATCGCTAGGTTCCTTAAAGCCGGAAAATACGCCGAACGCGTCGGTGCTGGTGCTCCTGTTTACCTCGCCGCCGTCCTTGAATATCTCGCCGCTGAGGTTTTGGAATTGGCTGGAAATGCTGCAAGGGATAACAAGAAAACTAGAATTGTGCCGAGACATATTCAATTGGCTGTTAGGAACGATGAAGAATTGAGCAAGCTTCTCGGTGATGTTACCATTGCTAATGGTGGTGTTATGCCTAATATTCACAATCTTTTGCTCCCAAAGAAGACTGGTGCTTCCTCTAAGTCTGCTGCTGCTGATGAAGACTCTTAG 408 0.4804 MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASSKSAAADEDS 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02127 135 PANTHER HISTONE H2A.6 2 133 - -
Car01g02127 135 CDD H2A 9 121 IPR002119 GO:0000786|GO:0003677|GO:0030527
Car01g02127 135 Gene3D Histone, subunit A 1 130 IPR009072 GO:0046982
Car01g02127 135 SUPERFAMILY Histone-fold 9 125 IPR009072 GO:0046982
Car01g02127 135 PANTHER HISTONE H2A 2 133 IPR002119 GO:0000786|GO:0003677|GO:0030527
Car01g02127 135 SMART h2a4 4 124 IPR002119 GO:0000786|GO:0003677|GO:0030527
Car01g02127 135 Pfam C-terminus of histone H2A 93 127 IPR032454 -
Car01g02127 135 Pfam Core histone H2A/H2B/H3/H4 13 90 IPR007125 GO:0003677
Car01g02127 135 ProSitePatterns Histone H2A signature. 23 29 IPR032458 -
Car01g02127 135 PRINTS Histone H2A signature 15 37 IPR002119 GO:0000786|GO:0003677|GO:0030527
Car01g02127 135 PRINTS Histone H2A signature 44 59 IPR002119 GO:0000786|GO:0003677|GO:0030527
Car01g02127 135 PRINTS Histone H2A signature 59 72 IPR002119 GO:0000786|GO:0003677|GO:0030527
Car01g02127 135 PRINTS Histone H2A signature 73 87 IPR002119 GO:0000786|GO:0003677|GO:0030527
Car01g02127 135 PRINTS Histone H2A signature 101 119 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02127 Car-Chr1 46858518 46859344 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02127 K11251 - tcc:18593695 210.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02127 01 46858518 46859344 Car01g02127 01 46858518 46859344 ECH