Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02082 ATGTCCAACTTCCTCGCTCAGTTCCAAACAATTAAGAATTCCTCCGATCGCCTCGTCATTTCAGTGGAGGATGTGAGTGATTTGTGGCCAACTGTCAAGCCTGCATTTGAGGCGCGGTTGCCGTTCAAAAGGGCAAGTTTGAATAACAAGACAAGGAACCCTGTCTTGGTTGAGAAATTGTCGGCCGAGTTCATATTAACGACAGATTCAAGGCTGCGTAGCCGGTTCCCTCAAGAGCAGTTGCTATTCTGGTTTCGAGAGCCGTATGCAACTGTTGTGCTCGTTACCTGCGAGGATCTTGATGAGTTTAAAACCATCCTTAAACCACGCCTCAAATTAATTGTCCAGAATGATGAAAGGGAATGGTTTATTGTATTTGTATCTAAAGCTCATCCAGCTAATGATCAGGCAAACAAAATGGCAAAGAAAGTATATGCTAAACTCGAAGTTGAGTTTAGCTCCAGAAAAAGAGAAAGATGCTGCAAATATGATATGCATTTCCCTGAAGCAAATTTTTGGGATGATCTGGAATCAAAGATAATGGAATGCATCAGAAATACACTGGATAGGCGCGTACAATTTTATGAGGATGAGATACGGAAGCTCAGTGAGCAGCGCCTCATGCCAGTCTGGAACTTCTGTAATTTTTTCATTCTGAAGGAAAGCTTGGCTTTTATGTTTGAAATGGCCCACCTCCATGAAGATGCATTACGGGAATATGATGAACTAGAACTCTGCTATCTTGAAACAGTTAACATGACTGGAAAACAAAGAGACTTTGGTGGGGCAGACCATGGTGACGATCAAGCAGCAATTCTCAATCCAGGAAAAAAAGCATTGGCGCAGATTGTCCAAGAGGATTCGTTTAGGGAGTTTGAATTCCGACAGTATCTGTTTGCCTGCCAATCAAAGCTGTTATTCAAGCTAAATCGACCTATTGAGGTAGCATCACGAGGTTATTCATTCATAATAAGCTTCTCAAAATCTTTGGCATTGCATGAGCGTATTCTACCTTTTTGTATGCGTGAAGTCTGGGTGATAACTGCTTGTTTAGCTTTAATTGAAGCAACCACTTCCAACTATAGTGATGGACTTGTGGCACCTGACGTAGAGAAGGAGTTCTTTCGTCTTCTTGGTGACCTATATTCTCTAGCCAGAGTTAAGTTCATGAGGCTAGCATATTTAATTGGGTATGGAACTGATATAGAAAGAAGTCCTTTGATTCTCCAAGCGACGCCTATTAGCAAGCACTTCGGTATCCAGAGGAAACCCTTGCCCCTTGAACCTACTGTACTTCTACGAGAGGCCAACAGGCGGAGGGCTTCACTTTCTGCTGGAAATGTGTTTGAAATGTTTGATAGCCGCCAAGCTTTAATGGAAGGATCAGGTTTTGATGCATCCCCCAAGATGTCACCACAAAAAGTACTTTCGAATTCCATGACACGCACTAATTCTTCTCCAGGAAACTTTGATAGCTCAATTGGCAGACCTATGAGGCTTGCTGAGATTTATATTGCTGCCGAACATGCTTTGAAGCAGACAATTTCTAATCTTGAGATGTTAAAATCATTATCATCATCTGAGGAGTTTGAGAAAAAATATTTAGAGCTAACTAAAGGTGCTGCTGACAATTACCACCGTTCCTGGTGGAAAAGACATGGAGTTGTCCTTGATGGTGAGATAGCTGCTGTTTCCTTTAAACATGGACATTTTGACCAAGCTGCAAAGTCATATGAGAAGGTTTGTGCACTGTATGCTGGTGAAGGATGGCAGGAGTTGTTGGCTGAGGTCCTTCCCAATTTAGCCGAGTGTCAGAAGATTCTTAATGATCAAGCTGGCTACTTGCTATCCTGTGTGAGGTTACTTTCTCTTGAAGATGGATTATTTTTGACGAAAGAGCGTCAAGCTTTTCAGGCAGAAGTGGTTCGTCTTGCTCATAGTGAAATGAAGGACCCTGTACATCTTGATGTATCATCATTAATTACATTTTCTGGAAATCCTGGGCCTCCATTGGAGTTATGCGATAGGGATCCTGGTATCCTTTCAGTAAATGTCTGGAGTGGTTTTCCAGATGATATAACTCTAGACTCAATCAGTCTTACGTTAATGGCAACATATAACGCAGATGAAGGTGTAAAGGCATTGAAAAGTTCTACAGCTATTGTATTACACCCTGGTCGAAATACTATTACCTTGGATCTACCACCTCAGAAACCAGGATCATATGTTCTTGGAGTTCTTACTGGGCAGATTGGACAGTTGAGGTTTAGATCTCATGGTTTTTCAAAAGTTGGTCCTGCAGAGAGTGATGATGTAATGAGTTATGAAAAGCCAGCTAAACCCATTTTGAAGGTTTCCAAACCTAGAGCCCTTGTTGATCTTGATGCTGCTGTTTCATCTGCTTTGTTAATAAATGAACACCAATGGGTTGGCATTTTTGTTCGGCCGTTAAATTACTCCCTCAAGGCCGCTGTCTTGCATATTGATACTGGTCCAGGATTGGAGATTGAAGAGTCACACATAATTGAGATGGAAAGCTATGCTGGTGTATCAGAGAATGATGATGGCCAGGTGCAGAAGGCTGGTGCTCAAATAGATTCCTTAAATTCTGAGAAAAAGTTTGAACGTTCAACTCTTCATGATGGTAAAATAGTGTTTCCGAATTGGGCAAGCGACACGCCTTCTATACTTTGGGTTTTGATTCACGCCATCAGTGACACGCTCAACAGAGGATCATCTTCAGTCACAACAAGGAGAGAGAGTATTGTAGATGGAATGAGAACAATAGCTCTGAAACTTGAATTTGGAGCATTCCACAATCAGATATTTGAAAGGACCCTTGCAGTGCATTTTACACATCCTTTCTATGTGAGGACACGTGTTACTGATAAATGCAATGATGGTACCCTGCTTCTGCAGGTAATACTTCACTCTGAAGTAAAGGCTACATTGACCATATACGATGCTTGGCTCGATCTTCAAGATGGATTTGTTCATTCCGGTCAAACTGAGGGTAGACCTAATTCAAGCTTCTTCCCACTAATCATATCTCCCACTTCCAAAGCAGGAATTTTGTTTAGTATCTTCCTAGACAACACAGATGCAGAAGAAGCCAAGAAGCAACCAGAAAGCATATTAAATATTAAATATGGAGTTTCTGGTGATAGAACAATTGGAGCCCATCCTCCTTTTATAAATGAATCTATGGAAGTTGAGGGTGCTAGACAGGAATTGATCTTCAAGAGTGCAATTATTTTGCAAAGGCCTGTGCTTGATCCGAGCCTAGCCGTTGGTTTTCTTCCTCTCCCTTCAGATGGCCTAAGAGTTGGACAACTAGTTAAGATGCAATGGAGGGTGGAAAGGTTGAAGGATTGGAATGAGAAAGAAATTTCTGAACAGAATGATGAGGTTCTGTATGAGGTAAACGCAAATTCTGGAAATTGGATGATTGCTGGAAGGAAAAGAGGGCATGTATCTCTCTCCAAAAATCAAGGTGCAAGGATAATTATCACCGTATTATGCATGCCATTAGTGGCTGGTTATGTGCGTCCTCCTCTACTAGGGCTGCCAGAAATTGATGAGGCAAATATAAAGTGCAAACCTTCTGGGCCACATCTAGTTTGTGTTTTGCCGCCAGCGCTCAGCTCATCCTTCTGTATTCCGGTTAATTCATGA 3675 0.4182 MSNFLAQFQTIKNSSDRLVISVEDVSDLWPTVKPAFEARLPFKRASLNNKTRNPVLVEKLSAEFILTTDSRLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLIVQNDEREWFIVFVSKAHPANDQANKMAKKVYAKLEVEFSSRKRERCCKYDMHFPEANFWDDLESKIMECIRNTLDRRVQFYEDEIRKLSEQRLMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMTGKQRDFGGADHGDDQAAILNPGKKALAQIVQEDSFREFEFRQYLFACQSKLLFKLNRPIEVASRGYSFIISFSKSLALHERILPFCMREVWVITACLALIEATTSNYSDGLVAPDVEKEFFRLLGDLYSLARVKFMRLAYLIGYGTDIERSPLILQATPISKHFGIQRKPLPLEPTVLLREANRRRASLSAGNVFEMFDSRQALMEGSGFDASPKMSPQKVLSNSMTRTNSSPGNFDSSIGRPMRLAEIYIAAEHALKQTISNLEMLKSLSSSEEFEKKYLELTKGAADNYHRSWWKRHGVVLDGEIAAVSFKHGHFDQAAKSYEKVCALYAGEGWQELLAEVLPNLAECQKILNDQAGYLLSCVRLLSLEDGLFLTKERQAFQAEVVRLAHSEMKDPVHLDVSSLITFSGNPGPPLELCDRDPGILSVNVWSGFPDDITLDSISLTLMATYNADEGVKALKSSTAIVLHPGRNTITLDLPPQKPGSYVLGVLTGQIGQLRFRSHGFSKVGPAESDDVMSYEKPAKPILKVSKPRALVDLDAAVSSALLINEHQWVGIFVRPLNYSLKAAVLHIDTGPGLEIEESHIIEMESYAGVSENDDGQVQKAGAQIDSLNSEKKFERSTLHDGKIVFPNWASDTPSILWVLIHAISDTLNRGSSSVTTRRESIVDGMRTIALKLEFGAFHNQIFERTLAVHFTHPFYVRTRVTDKCNDGTLLLQVILHSEVKATLTIYDAWLDLQDGFVHSGQTEGRPNSSFFPLIISPTSKAGILFSIFLDNTDAEEAKKQPESILNIKYGVSGDRTIGAHPPFINESMEVEGARQELIFKSAIILQRPVLDPSLAVGFLPLPSDGLRVGQLVKMQWRVERLKDWNEKEISEQNDEVLYEVNANSGNWMIAGRKRGHVSLSKNQGARIIITVLCMPLVAGYVRPPLLGLPEIDEANIKCKPSGPHLVCVLPPALSSSFCIPVNS 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02082 1224 Pfam Trafficking protein particle complex subunit 10, TRAPPC10 1106 1183 IPR022233 -
Car01g02082 1224 MobiDBLite consensus disorder prediction 471 491 - -
Car01g02082 1224 PANTHER EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 1 407 IPR045126 GO:0048193|GO:1990071
Car01g02082 1224 PANTHER EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 408 1222 IPR045126 GO:0048193|GO:1990071
Car01g02082 1224 MobiDBLite consensus disorder prediction 463 491 - -
Car01g02082 1224 Coils Coil 185 205 - -
Car01g02082 1224 PANTHER BNAC09G30770D PROTEIN 1 407 - -
Car01g02082 1224 PANTHER BNAC09G30770D PROTEIN 408 1222 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02082 K20307 - gmx:100787264 2168.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02082 01 46252680 46266555 Car01g02082 01 46252680 46266555 ECH