Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02073 ATGAACAAAGCCGTCGTGGCTTCAGACGAAGAACATCATCAACATCAACAAGAGTTCTTCTACGAATCCCACGACCGCTTACTCTCACTTTCTTCCTCTTGTTCTTGTTCCAACTCCAACTCCGACCaagaagaagaagaacaagaaaacaataacaataatattaataataataataacaataatTCTACTTACAATTTTGCCCTTAACAGTTACGACATATGGATCTCCCAACCCTCCTCCGTATCCGAACGCCGAACCCGTCTTCTCCAAACCATAGGTCTTTCATCCGACCCTTCCCTCTCTCGTGGAAACCCTATCCCTCCTCACAATGCAATGTTCCGATCCAAATCTGACGGTTACaacaataattctaacgataacggtaacgccaacaacaacACTTCTTTTCTTTCTCTTAATTCCGTCACTGTAAATAACCCTCTTCCCGCTAATTCCGGCGGATCCCCCGGTAAACCTCCATCCGGGAAGAATTCTAGGAGAAGTCATTCCGGTGCCGATTTTTTGCCCGGAACTTCGGCTTCTGCTGCGGCGGATACGACGGAGGTGGCGGTTTCAGGCGAAGTTGAATGTGACGAGGTTGAAAAAGAGAAAGAGAAAGAGGAAGCTTGTACCATTAGAGATCTCGACAATGGAAAGGAGTTTGTTGTGAAGGAGGTTAGAGAAGATGGAATGTGGAATAAGGTGAAGGAGGTTGGTACTGGGAGACAGTTGACTATGGAGGAATTCGAGATGACGGTCGGCCATTCTCCGATTGTGCAGGAGCTTATGCGGCGGCAGAATAACGAGGATACCGGAGATGGAGTCGGTGGTTCTGGCGGCGGCGGTGGTGTTACTAATGGTAATGGTAATGGAAACTCTTCTAAGGGGAAGAAGAAAGGTGGGAGTTGGTTGAAGAGTATTAAGAATGTTGCTAGTTCAATGGCAGGTCATAAGGACCGGCGGAGTAGTGACGAGAGGGATACTTCGTCGGAGAAAGGTGGTAGGAGGTCGAGTTCGGCTACCGATGATAGTCAGGACGGTTCGTTTCACGGACCTGAGAGGGTTAGAGTGAGACAATATGGGAAATCATGTAAAGAGGTTACTGCATTGTTTAAGAGTCAAGAGATTCAAGCTCATAATGGTTCAATTTGGAGTATTAAGTTTAGTTTAGATGGGAAATATCTAGCTAGTGCTGGTGAGGATTGTGTGATTCATGTTTGGCAGGTTGTGGAATCTGAGAGGAAAGGGGAGTTGTTGCTTATGGAGAAACACGAAGATGTAAATGTTAATATGTTATTTCTTGTTAATGGGTCGCCGGAACCGGCTTTGGTGTCTCCTTTGGCAGATAATCTTCCCGAAAGGAAGAGAAAGGGTAGGTCGTCCGTTAGTAGAAAATCGTTGAGCTTGGACCAATTTGTTGTCCCTGAAACTGTGTTTGCACTTACTGAGAAACCCATTTGCTCCTTTCAAGGTCATTTAGATGATGTGCTTGATCTCTCGTGGTCTAAGTCTCAGCACCTGCTCTCATCTTCAATGGACAAAACAGTGCGGCTGTGGCATTTGTCTAGCAAATCTTGTTTAAAGATTTTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGCGGATCGTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGGCAAGTTGTTGATTGGATTGATCTTCATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGGTGCACTAGTTGGTTCATACAAGGGTAGCTGTCATTTATATAATACATCTGAAAATAAGTTGCAACAGAAAAGTCAGATCAATCTGCAGAACAAGAAAAAGAAGTCGAATCACAAGAAAATTACTGGTTTCCAGTTTGCCCCAGGAAGTTCATCTGAAGTACTTATCACATCTGCTGATTCTCGAATTCGGGTTGTCGATGGTGTTGATCTGGTTCATAAGTTTAAAGGCTTTCGAAATGCAAGTAGCCAGATTTCAGCCTCCCTCACAGCAAATGGCAAATATATTGTTGCAGCAAGTGAGGATTCCCATGTATACATCTGGAAAAATGAAGCCGATTGCAGGCCTAACAGGAGTAAAGGTGTCACCGTGACACAGTCCTATGAGCATTTTCACTGTAAAGATGTCTCAGTGGCCGCTCCCTGGCCTGGTATGGGTGATACATGGGACATGCGTGATACATTTTCTGGAGAACAACCGGAGCTTGATAACAACAACGACGAAATCACATCAGCCAATCATCCTCCTACACCTGTAGAGGAAAACTTTGGTAATGAGGGTTCACAGTCTGCTTCAGGTTACAATAGTCCACACCATGCAACCATTGCAAGTGCAACAAATAGTTACTTTTTCGATAGAATTTCTGCAACATGGCCAGAGGAAAAACTTCTTCTAGCTGCAAGAAACCAAAGCCCTCGTGTCAGTATGGATTTCTCAAATGGGGTAAGTCAAAAAATGTCAGCCTGGGGTATGGTGATTGTTACTGCTGGTCTTCGAGGTGAGATTAGAACTTTCCAAAATTTTGGATTACCACTGCGAATATAA 2592 0.4298 MNKAVVASDEEHHQHQQEFFYESHDRLLSLSSSCSCSNSNSDQEEEEQENNNNNINNNNNNNSTYNFALNSYDIWISQPSSVSERRTRLLQTIGLSSDPSLSRGNPIPPHNAMFRSKSDGYNNNSNDNGNANNNTSFLSLNSVTVNNPLPANSGGSPGKPPSGKNSRRSHSGADFLPGTSASAAADTTEVAVSGEVECDEVEKEKEKEEACTIRDLDNGKEFVVKEVREDGMWNKVKEVGTGRQLTMEEFEMTVGHSPIVQELMRRQNNEDTGDGVGGSGGGGGVTNGNGNGNSSKGKKKGGSWLKSIKNVASSMAGHKDRRSSDERDTSSEKGGRRSSSATDDSQDGSFHGPERVRVRQYGKSCKEVTALFKSQEIQAHNGSIWSIKFSLDGKYLASAGEDCVIHVWQVVESERKGELLLMEKHEDVNVNMLFLVNGSPEPALVSPLADNLPERKRKGRSSVSRKSLSLDQFVVPETVFALTEKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWIDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSNHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNASSQISASLTANGKYIVAASEDSHVYIWKNEADCRPNRSKGVTVTQSYEHFHCKDVSVAAPWPGMGDTWDMRDTFSGEQPELDNNNDEITSANHPPTPVEENFGNEGSQSASGYNSPHHATIASATNSYFFDRISATWPEEKLLLAARNQSPRVSMDFSNGVSQKMSAWGMVIVTAGLRGEIRTFQNFGLPLRI 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02073 863 MobiDBLite consensus disorder prediction 95 194 - -
Car01g02073 863 Gene3D - 348 441 IPR015943 GO:0005515
Car01g02073 863 Coils Coil 38 61 - -
Car01g02073 863 ProSiteProfiles Trp-Asp (WD) repeats profile. 490 530 IPR001680 GO:0005515
Car01g02073 863 Pfam WD domain, G-beta repeat 376 408 IPR001680 GO:0005515
Car01g02073 863 Pfam WD domain, G-beta repeat 661 698 IPR001680 GO:0005515
Car01g02073 863 Pfam WD domain, G-beta repeat 526 563 IPR001680 GO:0005515
Car01g02073 863 Pfam WD domain, G-beta repeat 485 520 IPR001680 GO:0005515
Car01g02073 863 ProSiteProfiles Trp-Asp (WD) repeats profile. 377 418 IPR001680 GO:0005515
Car01g02073 863 PANTHER WD REPEAT DOMAIN 44 140 863 IPR040324 -
Car01g02073 863 PANTHER WD REPEAT DOMAIN 44 9 103 IPR040324 -
Car01g02073 863 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 9 103 - -
Car01g02073 863 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 140 863 - -
Car01g02073 863 MobiDBLite consensus disorder prediction 269 358 - -
Car01g02073 863 MobiDBLite consensus disorder prediction 747 785 - -
Car01g02073 863 MobiDBLite consensus disorder prediction 116 187 - -
Car01g02073 863 Gene3D - 466 725 IPR015943 GO:0005515
Car01g02073 863 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 377 410 - -
Car01g02073 863 SUPERFAMILY WD40 repeat-like 373 700 IPR036322 GO:0005515
Car01g02073 863 ProSiteProfiles Trp-Asp (WD) repeats profile. 530 564 IPR001680 GO:0005515
Car01g02073 863 SMART WD40_4 483 521 IPR001680 GO:0005515
Car01g02073 863 SMART WD40_4 617 656 IPR001680 GO:0005515
Car01g02073 863 SMART WD40_4 524 563 IPR001680 GO:0005515
Car01g02073 863 SMART WD40_4 370 409 IPR001680 GO:0005515
Car01g02073 863 SMART WD40_4 657 698 IPR001680 GO:0005515
Car01g02073 863 SMART WD40_4 566 604 IPR001680 GO:0005515
Car01g02073 863 MobiDBLite consensus disorder prediction 746 785 - -
Car01g02073 863 MobiDBLite consensus disorder prediction 315 340 - -
Car01g02073 863 PRINTS G protein beta WD-40 repeat signature 396 410 IPR020472 -
Car01g02073 863 PRINTS G protein beta WD-40 repeat signature 508 522 IPR020472 -
Car01g02073 863 PRINTS G protein beta WD-40 repeat signature 550 564 IPR020472 -
Car01g02073 863 MobiDBLite consensus disorder prediction 32 62 - -
Car01g02073 863 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 530 564 - -
Car01g02073 863 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 490 524 - -
Car01g02073 863 MobiDBLite consensus disorder prediction 284 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02073 Car-Chr1 46075479 46082506 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02073 488 759 Acyl Lipid Metabolism Gene Families AT3G18860 23.899 1.76e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02073 K20241 - gmx:100815065 1096.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02073 01 46075479 46082506 Car01g02073 01 46075479 46082506 ECH