Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02072 ATGGCTCTTCAAGCTGCTTCTTTGCTTCCTGCTTCTTTCTCCATTCCTAAAGAGGGTAAGGGTGGTGTTTCTCTTAAGGATTCCACCCTTTTTGGTCTTTCATTGTCTGAATCTTTGAAAGGTGATTTCAGCTCTTCTGCATTGAGGTGCAAGAGGGAATTGCGACAAAAGGTCGGTGCTGTGAGGGCAGAGACAGCAGCTACAGCAACTCCAGCAGTTAACAAATCTTCACAAGATGGCAAGAAAACACTGAGGAAAGGCAATGTTGTGATCACTGGTGCTTCTTCTGGATTAGGCCTTGCCACTGCTAAGGCTTTGGCTGAGACAGGAAAATGGCATGTAATTATGGCTTGCAGGGATTTCCTCAAAGCTGCAAGAGCAGCAAAATCTGCTGGAATGGCTAAGGAAAATTATACTATCATGCACTTAGACCTTTCCTCTCTTGACAGTGTTCACCAATTTGTTGATAACTTCAGGCGATCCGGAATGCCACTCGATGTGCTTGTTAACAATGCTGCTGTTTACTTGCCAACTGCTAAGGAACCTAGATTCACTGCTGAAGGCTTTGAACTTAGTGTTGGGACAAATCATTTGGGACATTTTCTTCTCTCGCGCCTTTTGCTTGAGGACTTGCAGAAATCTGATTACCCTTCAAAGCGCTTGATCATTGTTGGCTCAATCACAGGTAACACAAACACATTGGCCGGAAATGTACCTCCGAAGGCTAACCTTGGTGACTTGAGGGGACTTGCCGGTGGCTTGAATGGGCTAAACAGTTCATCCATGATAGACGGTGGAGATTTCGATGGTGCAAAGGCGTACAAGGACAGCAAAGTGTGTAATATGCTGACAATGCAAGAGTTCCACAGAAGATACCATGAGGAAACTGGAATCACATTTGCTTCCCTCTATCCTGGTTGCATTGCAACAACAGGCTTGTTTAGGGAACACATTCCCTTGTTCAGAACGCTATTCCCTCCATTCCAAAAGTACATAACCAAAGGCTATGTCTCAGAAGAAGAATCAGGAAAGAGACTTGCTCAGGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAACAAAGCTTCTGCTTCATTTGAAAACCAGCTATCCCAAGAGGCCAGTGATGTCGAGAAGGCTCGCAAGGTGTGGGAGGTTAGTGAGAAGCTTGTTGGTTTGGCCTAA 1200 0.4517 MALQAASLLPASFSIPKEGKGGVSLKDSTLFGLSLSESLKGDFSSSALRCKRELRQKVGAVRAETAATATPAVNKSSQDGKKTLRKGNVVITGASSGLGLATAKALAETGKWHVIMACRDFLKAARAAKSAGMAKENYTIMHLDLSSLDSVHQFVDNFRRSGMPLDVLVNNAAVYLPTAKEPRFTAEGFELSVGTNHLGHFLLSRLLLEDLQKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEEESGKRLAQVVSDPSLTKSGVYWSWNKASASFENQLSQEASDVEKARKVWEVSEKLVGLA 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02072 399 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 83 366 IPR036291 -
Car01g02072 399 Gene3D - 73 399 - -
Car01g02072 399 PRINTS Glucose/ribitol dehydrogenase family signature 88 105 IPR002347 -
Car01g02072 399 PRINTS Glucose/ribitol dehydrogenase family signature 163 174 IPR002347 -
Car01g02072 399 PRINTS Glucose/ribitol dehydrogenase family signature 296 313 IPR002347 -
Car01g02072 399 CDD LPOR_like_SDR_c_like 86 398 - -
Car01g02072 399 PANTHER NADPH-PROTOCHLOROPHYLLIDE OXIDOREDUCTASE 1 398 - -
Car01g02072 399 Pfam short chain dehydrogenase 89 231 IPR002347 -
Car01g02072 399 PANTHER - 1 398 IPR005979 GO:0016630
Car01g02072 399 TIGRFAM LPOR: light-dependent protochlorophyllide reductase 85 399 IPR005979 GO:0016630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02072 Car-Chr1 46070518 46072832 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02072 K00218 - gmx:100785637 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02072 01 46070518 46072832 Car01g02072 01 46070518 46072832 ECH