Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02071 ATGGCTGATCGCTTCTTTCCGAACGACTTGCCACCATTCGTTGCAGAGACCACACTTgatgaagaagaagaagaagaagaaaaagaagCAACTCATTCCCAACCACACTCTCTCACCTCACTCCTTTCTCTACCTTACCAAACACTCTCCACAAACCTCCAACAAGCAGCACTTCACTTTAAACAATCGGTGGTGAGTGAGACATGGGGTTCGAGTGGGAACCGTGTGAAGGACTATACTCTCTACACGGGGGCTCTTGGAACAGCTTACCTGCTTTTCAAGGCTTACCAAGTAACCAAGAATGTGGATGATCTTAACTTGTGCTCCAAGATTGTTAAGGCTTGTGATTCTGCTTCAAAAAATTCAAGCCGTGTGACGTTCATCTGTGGGCGTGCCGGTGTGTGTGCTCTTGGTGCTGTCATAGCTAAGCACGCCGGTGATGGGAGACTACTTGACTATTACCTTAGACAATTCAAAGAGATTGAGCTACCTCATGATTTGCCCTACGAGGTATTGTATGGAAAGGCAGGTTACTTATGGGCTTGTTCATTCTTAAACAAGCATATTGGTAAAGACACAATACCTACTGCTGACATGAGACCGATTGTGGAAGAAGTTATAACAGCCGGTAGAAAATTGGCTCACAAGGGAAGATGTCCTTTGATGTATGAATGGCATGGGAAGAAGTACTGGGGTGCTGCTCATGGACTTGCAGGCATTATGAATGTTTTGATGGGCATGGAACTCAAGCCAGATGAGGTGGAAGATGTCAAGGGTACACTACGTTACATGATTAAGAATCGTTTCTCGAGTGGCAATTATCCCTCCAGTGAAGGAAGTGAATCTGACCGTCTTGTGCACTGGTGTCATGGTGCTCCTGGAGTAACTCTTACGCTTGTGAAAGCAGTCGAGGCTTTTGAGGATAAGGAATTTTTGCAAGCAGCTGTAGATGCTGGAGAAGTAGTATGGAACAGAGGTCTTCTTAAGCGAGTTGGACTTTGCCACGGTGTCAGTGGGAACACCTATGTCTTTCTTTCTCTGTACAGATTGACAGGAAATAAGGAGTACTTATACAGGGCTAAAGGATTTTCTTGCTTTCTACTTGACAGAGCACAAAAATTGATAGTCAAAGGAAAGATGCACGGTGGAGATCGCCCTTATTCCTTATTTGAAGGTCTTGGAGGAATGGCAAATACCTTTCTAGACATGGTTGATCCACAAGTGGCAAGGTTTCCTGGCTATGAGCTCTGA 1251 0.4412 MADRFFPNDLPPFVAETTLDEEEEEEEKEATHSQPHSLTSLLSLPYQTLSTNLQQAALHFKQSVVSETWGSSGNRVKDYTLYTGALGTAYLLFKAYQVTKNVDDLNLCSKIVKACDSASKNSSRVTFICGRAGVCALGAVIAKHAGDGRLLDYYLRQFKEIELPHDLPYEVLYGKAGYLWACSFLNKHIGKDTIPTADMRPIVEEVITAGRKLAHKGRCPLMYEWHGKKYWGAAHGLAGIMNVLMGMELKPDEVEDVKGTLRYMIKNRFSSGNYPSSEGSESDRLVHWCHGAPGVTLTLVKAVEAFEDKEFLQAAVDAGEVVWNRGLLKRVGLCHGVSGNTYVFLSLYRLTGNKEYLYRAKGFSCFLLDRAQKLIVKGKMHGGDRPYSLFEGLGGMANTFLDMVDPQVARFPGYEL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02071 416 PRINTS LanC-like protein superfamily signature 78 96 IPR007822 -
Car01g02071 416 PRINTS LanC-like protein superfamily signature 169 184 IPR007822 -
Car01g02071 416 PRINTS LanC-like protein superfamily signature 230 246 IPR007822 -
Car01g02071 416 PRINTS LanC-like protein superfamily signature 285 305 IPR007822 -
Car01g02071 416 PRINTS LanC-like protein superfamily signature 331 344 IPR007822 -
Car01g02071 416 PRINTS LanC-like protein superfamily signature 386 403 IPR007822 -
Car01g02071 416 PANTHER LANC-LIKE PROTEIN 1 416 - -
Car01g02071 416 Gene3D - 1 416 IPR012341 GO:0005975
Car01g02071 416 Pfam Lanthionine synthetase C-like protein 76 416 IPR007822 -
Car01g02071 416 SMART LANC_like_2 75 416 IPR007822 -
Car01g02071 416 SUPERFAMILY LanC-like 71 416 - -
Car01g02071 416 CDD euk_LANCL 81 412 - -
Car01g02071 416 PRINTS Eukaryotic LanC-like protein family signature 2 15 IPR020464 -
Car01g02071 416 PRINTS Eukaryotic LanC-like protein family signature 219 231 IPR020464 -
Car01g02071 416 PRINTS Eukaryotic LanC-like protein family signature 265 280 IPR020464 -
Car01g02071 416 PRINTS Eukaryotic LanC-like protein family signature 302 323 IPR020464 -
Car01g02071 416 PRINTS Eukaryotic LanC-like protein family signature 347 365 IPR020464 -
Car01g02071 416 PANTHER LANC-LIKE PROTEIN GCL2 1 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02071 Car-Chr1 46067164 46069928 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02071 - - gmx:100786158 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02071 01 46067164 46069928 Car01g02071 01 46067164 46069928 ECH