Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02066 ATGGTAGACCGTTATAGACCTGTTTCAATTGAGGAATTACCTTCACATTTGATTTTGGAGATTCTGTGCTCAGGGAAGCTAAGTGCAATAGACCTTGTTTGTTTGGAGTTTACTTCAAAAACTTTTGGTGCTAGTAATCATGGCTTTTACCCTTTCAAGTTTAAGTCATTGATAGACTTTGCTGCATTTCAATTGTGTGCTTCGAATGCCACATATTCCATGATGGGTTTGAATTCTCAGAGAGAGTTGTATGATCGATGTGGCGGAAATTGGAAGCGAGTTTTGAGGTTCTTGCAGTCTGTTGAACAATCCTCTGACATGGTTGATACATCATCAGGCAATATGCAAATTACAACAGGAAAGTATCACACATTGGCGATCAGCAACTCCTCGGTCTATTCTTGTGGTTCTAGTTTGTGTGGTGTACTTGGTCAAGGGCCTGAAACAACACAGCGTACATCCTTTACCCGGATTGATTTCCCACCTTTGGCGCACGTGGTGCATGTTTCAGCCTCCTATAACCATGCAGCTTTTGTTATGCAATCTGGAGAGGTATTCACATGTGGAGATAATTCATCTTCGTGCTGTGGTCATAGAGATACAAGTCGACCAATTTTCAGGCCACGTCTTGTTGAATCCTTGAAGGGGATTCCTTGCAAGCAGGTTGCAGCTGGGCTAAACTTCACAGTCTTCCTCACTAGACAAGGTCATGTTTACACGTGCGGAGCCAACTCACATGGCCAACTTGGTCACGGCGACACTCAGGACAGACCGACCCCCAAAATGATTGAAATCCTCGGTGATGTAGGCCCTGTTGTTCAGGTTGCCGCTGGACCAAACTTTATCTTATCTGTAACACAAGATGGAGGAGTATACTCCTTTGGATCAGGTTCTAATTTCTGTCTCGGCCATGGTGAGCAACACGATGAACTTCTGCCACGTTCCATACAAAAATTTAGAAGGAAAAATATTCATGTTGTCCGTGTATCTTCTGGGGACGAGCATGCAGTTGCACTTGATTCAAATGGATTTGTATATACATGGGGCAAGGGATATTGTGGTGCTTTAGGTCATGGAGATGAGATTGAGAAGACAACACCAGAGATATTGTCTAGTCTCAAGAATCACTTGGCTGTTCAGGTGTGTGCAAGAAAGAGAAAAACCTTTGTTCTAGTTGATTCAGGTTTGGTCTATGGTTTTGGCTCAATGGGATTTGGCAGCCTAGGATTTTTGGACAGAAGGGTATCTGATAAAGTCTTGAAGCCTAGAATCTTAAACACATTAAGATCTCACCATGTTTCTCAAATTAGCACTGGCCTATACCACACTGTTGTAGTCACTAACCGTGGACAAATATTTGGCTTTGGAGACAATGAAAGAGCTCAACTTGGTCATGACACATTAAGAGAATGCCTTGAACCTACAGAAATTTTCATACAAAATAATAATACAACTGAAGATGTTGACCCTATGTTATAA 1479 0.4219 MVDRYRPVSIEELPSHLILEILCSGKLSAIDLVCLEFTSKTFGASNHGFYPFKFKSLIDFAAFQLCASNATYSMMGLNSQRELYDRCGGNWKRVLRFLQSVEQSSDMVDTSSGNMQITTGKYHTLAISNSSVYSCGSSLCGVLGQGPETTQRTSFTRIDFPPLAHVVHVSASYNHAAFVMQSGEVFTCGDNSSSCCGHRDTSRPIFRPRLVESLKGIPCKQVAAGLNFTVFLTRQGHVYTCGANSHGQLGHGDTQDRPTPKMIEILGDVGPVVQVAAGPNFILSVTQDGGVYSFGSGSNFCLGHGEQHDELLPRSIQKFRRKNIHVVRVSSGDEHAVALDSNGFVYTWGKGYCGALGHGDEIEKTTPEILSSLKNHLAVQVCARKRKTFVLVDSGLVYGFGSMGFGSLGFLDRRVSDKVLKPRILNTLRSHHVSQISTGLYHTVVVTNRGQIFGFGDNERAQLGHDTLRECLEPTEIFIQNNNTTEDVDPML 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02066 492 SUPERFAMILY RCC1/BLIP-II 379 483 IPR009091 -
Car01g02066 492 Pfam Regulator of chromosome condensation (RCC1) repeat 342 383 IPR000408 -
Car01g02066 492 Pfam Regulator of chromosome condensation (RCC1) repeat 236 281 IPR000408 -
Car01g02066 492 Pfam Regulator of chromosome condensation (RCC1) repeat 182 232 IPR000408 -
Car01g02066 492 Pfam Regulator of chromosome condensation (RCC1) repeat 288 339 IPR000408 -
Car01g02066 492 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 289 342 IPR000408 -
Car01g02066 492 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 9 481 - -
Car01g02066 492 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 329 339 IPR000408 -
Car01g02066 492 PRINTS Chromosome condensation regulator RCC1 signature 290 306 IPR000408 -
Car01g02066 492 PRINTS Chromosome condensation regulator RCC1 signature 326 339 IPR000408 -
Car01g02066 492 PRINTS Chromosome condensation regulator RCC1 signature 345 361 IPR000408 -
Car01g02066 492 PRINTS Chromosome condensation regulator RCC1 signature 436 452 IPR000408 -
Car01g02066 492 PRINTS Chromosome condensation regulator RCC1 signature 452 466 IPR000408 -
Car01g02066 492 SUPERFAMILY RCC1/BLIP-II 110 412 IPR009091 -
Car01g02066 492 Gene3D - 67 269 IPR009091 -
Car01g02066 492 Gene3D - 270 490 IPR009091 -
Car01g02066 492 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 183 235 IPR000408 -
Car01g02066 492 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 343 394 IPR000408 -
Car01g02066 492 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 436 446 IPR000408 -
Car01g02066 492 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 236 288 IPR000408 -
Car01g02066 492 Pfam Regulator of chromosome condensation (RCC1) repeat 433 461 - -
Car01g02066 492 PANTHER BNAA01G28890D PROTEIN 9 481 - -
Car01g02066 492 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 395 449 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02066 Car-Chr1 45995649 46000649 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02066 - - lang:109357264 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02066 01 45995649 46000649 Car01g02066 01 45995649 46000649 ECH