Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02065 ATGGATCGTGTTCTCAAAGCGGCGAGAGCATCCGGTTCTCTCAACCTCTCTAACCGTTCTCTCAGTGAAGTTCCCGATGAGGTTTATCGGAATCTGGAAGGGGTCGGTGGTACTGATGATAAGTGGTGGGAGGCTGCAGAGCTTCAGAAACTCATCTTGGCTCACAATAGTATTGAATTGTTAAAGGAAGATATCAGAAATTTACCTTTTCTTACTGTGTTGAATCTTAGTCACAATAGCCTTTCTCAGCTTCCTGCCGCTATAGGAGAGCTACCTCAGTTGAAGATGTTGGATGTTTCGTATAATTCGTTACTGAGAATACCGGAGGCGATTGGATCAGCTGCTTCGCTTGTGAAGTTCGATTGTTCAAATAATCAGCTCACAGAACTTACTAGCTCACTAGGAAGATGCTTGGAGTTGTCGGACTTAAAGGGATCAAACAATCTTATTGCAAGCTTGCCAGAAGATTTGGCAAATTGTTCCAAATTGTCTAAGCTAGACATGGAGGGAAACAAGCTTACAGAGATATCTGAAAATATCATTTCATCATGGACAAGGCTTACTGAATTAAATGCATCAAAAAATATGCTGAATGGCATACCCGTCGGCATTGGAGGCCTTTCACGTTTAATTCGTCTTGATCTCCATCAGAACAGAATCTCATCAATCCCTTCATCAATCATTGGTTGTCATTCACTTGCAGAGTTTTATTTGGGGAATAACAATATTTCTACAATACCAGTGGAGATAGGGGAACTTTCTCGGCTCGGGACATTAGATCTTCACTCTAACCAGCTGAAGGAGTATCCTGTGGAGGCATGCAAATTGAGTCTGTTAGTCTTGAATCTTTCAAATAACTCATTGAGTGGGTTACCTCCTGAAATGGGTAAGATGACTAGCTTGAGGAAACTTCTGCTTAGTGGAAACCCATTGCGTACTCTTCGAAGCTCATTAGTCACTGGACCTACACCAGCATTATTGAAATTTCTTCGGAGTAGACTTTCTGAAGGTGAAGATTCTGAAGCTATAACCACATCAAAAAAGGACATAATTGCAATGGCTACCCGACTATCTATCACTTCAAAGGAACTTTCTATGGGAGGGCTGGGGTTGAGTGCTATTCCATCAGAAGTATGGGAATCAGAGGAGGTCATAAAACTTGATCTTTCCAGAAACTCAATCCAGGAGTTGCCAGTTGAACTCTCTTCTTGTGTTTCCCTACAGACATTGATTTTATCAAAAAATCAAATTAAAGACTGGCCAGGTTCAATTCTTAAATCACTTTCAAGTCTTTCATGTTTGAAGCTGGACAACAATCCCCTCAGACAGATACCTTCATATGGTTTTGAAGTGGTTCCTAAGCTTCAGATCCTGGATCTAAGTGGAAATGCAGCTTCATTAGTAGACGGTCCTGCATTTTCTAGTCTACCAAACCTGCAAGAGCTTTACCTGAGAAAAATGCGTCTCACTGAAATTCCGTCAGATATATTGGGGTTGCATCAACTGCGGATCCTCGACTTGAGTCAGAATTCTCTTCAATCAGTTCCAGAGGGGTTAAAAAATATCACTTCTCTTGTGGAGCTTGATCTATCTGATAACAACATCTCATCCCTTCCACCTGAGCTGGGTTTGCTGGAACCAAGCCTTCAGGCATTGAGACTTGATGGGAACCCACTTAGAAGCATTCGGAGAACTGTCTTGGATAAAGGAACTAAAGCTAGTGCATTATGGATACTATCCCATTCCGCTTTCTTATTCTATGAATTGCATTTGACAGGGGAGGGACATTTTGGGAATTCCGAAATTAAAAAAACACGAGAAGAGAGGTTATCTCCTCTCTCAACCGAAAGAAGCTCCGGCGGTCACGTCGTCTCCGGTGGTCGCACTCTCTTTTTCTTTGCTTCGTTTCAAACTCTCATTCACCGGAATATGGAAGCAGATGCAACAGCAGCACGTGATCATGAAGATCAAGATGAATATATTTTGCTTGACTTGGACGCTGTTAATGACCTAATTAGTTTTCCACCAAATGCAAACTATGTTCTTACTGGCCTTGACACTTTAAACCCGGTATTGATCATTGATGACAAATTTAAGTTGATTGGGGAGTATGAGGAGACAATTGGAACATGTATCGCCTTCGAAGAACAAGATACCCCAGTGGTTCATGAAGAGACAGGACCATCTGAAGCGAACCTATTTTCCGGAACAAGACTAATCGATTCAAGTCAACCTCCAACAAAGCAAGTCAGACCTGTGTGTCAGCTTCATAAGGTTCTCAAGTTTAAATTATCACCTGATTCTGAAATTCAAAGTCGCACAGATGAGGAGGCCAATTGA 2340 0.4184 MDRVLKAARASGSLNLSNRSLSEVPDEVYRNLEGVGGTDDKWWEAAELQKLILAHNSIELLKEDIRNLPFLTVLNLSHNSLSQLPAAIGELPQLKMLDVSYNSLLRIPEAIGSAASLVKFDCSNNQLTELTSSLGRCLELSDLKGSNNLIASLPEDLANCSKLSKLDMEGNKLTEISENIISSWTRLTELNASKNMLNGIPVGIGGLSRLIRLDLHQNRISSIPSSIIGCHSLAEFYLGNNNISTIPVEIGELSRLGTLDLHSNQLKEYPVEACKLSLLVLNLSNNSLSGLPPEMGKMTSLRKLLLSGNPLRTLRSSLVTGPTPALLKFLRSRLSEGEDSEAITTSKKDIIAMATRLSITSKELSMGGLGLSAIPSEVWESEEVIKLDLSRNSIQELPVELSSCVSLQTLILSKNQIKDWPGSILKSLSSLSCLKLDNNPLRQIPSYGFEVVPKLQILDLSGNAASLVDGPAFSSLPNLQELYLRKMRLTEIPSDILGLHQLRILDLSQNSLQSVPEGLKNITSLVELDLSDNNISSLPPELGLLEPSLQALRLDGNPLRSIRRTVLDKGTKASALWILSHSAFLFYELHLTGEGHFGNSEIKKTREERLSPLSTERSSGGHVVSGGRTLFFFASFQTLIHRNMEADATAARDHEDQDEYILLDLDAVNDLISFPPNANYVLTGLDTLNPVLIIDDKFKLIGEYEETIGTCIAFEEQDTPVVHEETGPSEANLFSGTRLIDSSQPPTKQVRPVCQLHKVLKFKLSPDSEIQSRTDEEAN 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02065 779 Pfam TFIIIC subunit triple barrel domain 655 738 IPR019481 -
Car01g02065 779 ProSiteProfiles Leucine-rich repeat profile. 524 545 IPR001611 GO:0005515
Car01g02065 779 PANTHER LRR RECEPTOR-LIKE KINASE 137 574 - -
Car01g02065 779 PRINTS Leucine-rich repeat signature 499 512 - -
Car01g02065 779 PRINTS Leucine-rich repeat signature 278 291 - -
Car01g02065 779 SMART LRR_bac_2 160 179 - -
Car01g02065 779 SMART LRR_bac_2 381 400 - -
Car01g02065 779 SMART LRR_bac_2 68 87 - -
Car01g02065 779 SMART LRR_bac_2 275 295 - -
Car01g02065 779 SMART LRR_bac_2 91 110 - -
Car01g02065 779 SMART LRR_bac_2 428 447 - -
Car01g02065 779 SMART LRR_bac_2 499 518 - -
Car01g02065 779 SMART LRR_bac_2 207 226 - -
Car01g02065 779 ProSiteProfiles Leucine-rich repeat profile. 209 230 IPR001611 GO:0005515
Car01g02065 779 ProSiteProfiles Leucine-rich repeat profile. 406 427 IPR001611 GO:0005515
Car01g02065 779 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 137 574 - -
Car01g02065 779 ProSiteProfiles Leucine-rich repeat profile. 277 298 IPR001611 GO:0005515
Car01g02065 779 SUPERFAMILY L domain-like 362 560 - -
Car01g02065 779 SMART LRR_typ_2 160 183 IPR003591 -
Car01g02065 779 SMART LRR_typ_2 428 451 IPR003591 -
Car01g02065 779 SMART LRR_typ_2 405 427 IPR003591 -
Car01g02065 779 SMART LRR_typ_2 522 545 IPR003591 -
Car01g02065 779 SMART LRR_typ_2 298 321 IPR003591 -
Car01g02065 779 SMART LRR_typ_2 253 276 IPR003591 -
Car01g02065 779 SMART LRR_typ_2 115 137 IPR003591 -
Car01g02065 779 SMART LRR_typ_2 452 475 IPR003591 -
Car01g02065 779 SMART LRR_typ_2 499 521 IPR003591 -
Car01g02065 779 SMART LRR_typ_2 547 569 IPR003591 -
Car01g02065 779 SMART LRR_typ_2 68 89 IPR003591 -
Car01g02065 779 SMART LRR_typ_2 382 404 IPR003591 -
Car01g02065 779 SMART LRR_typ_2 91 114 IPR003591 -
Car01g02065 779 SMART LRR_typ_2 207 230 IPR003591 -
Car01g02065 779 SMART LRR_typ_2 231 251 IPR003591 -
Car01g02065 779 SMART LRR_typ_2 476 498 IPR003591 -
Car01g02065 779 SMART LRR_typ_2 277 297 IPR003591 -
Car01g02065 779 Pfam BspA type Leucine rich repeat region (6 copies) 135 195 IPR026906 -
Car01g02065 779 PANTHER LRR RECEPTOR-LIKE KINASE 14 130 - -
Car01g02065 779 ProSiteProfiles Leucine-rich repeat profile. 501 522 IPR001611 GO:0005515
Car01g02065 779 Gene3D Ribonuclease Inhibitor 1 176 IPR032675 -
Car01g02065 779 Pfam Leucine rich repeat 47 104 IPR001611 GO:0005515
Car01g02065 779 Pfam Leucine rich repeat 209 266 IPR001611 GO:0005515
Car01g02065 779 Pfam Leucine rich repeat 453 512 IPR001611 GO:0005515
Car01g02065 779 Gene3D Ribonuclease Inhibitor 334 467 IPR032675 -
Car01g02065 779 Gene3D Ribonuclease Inhibitor 177 273 IPR032675 -
Car01g02065 779 Gene3D Ribonuclease Inhibitor 468 576 IPR032675 -
Car01g02065 779 Gene3D - 646 763 - -
Car01g02065 779 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 14 130 - -
Car01g02065 779 Gene3D Ribonuclease Inhibitor 274 333 IPR032675 -
Car01g02065 779 SUPERFAMILY L domain-like 40 315 - -
Car01g02065 779 SMART LRR_sd22_2 160 182 - -
Car01g02065 779 SMART LRR_sd22_2 207 232 - -
Car01g02065 779 SMART LRR_sd22_2 404 433 - -
Car01g02065 779 SMART LRR_sd22_2 499 521 - -
Car01g02065 779 SMART LRR_sd22_2 522 540 - -
Car01g02065 779 ProSiteProfiles Leucine-rich repeat profile. 70 91 IPR001611 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02065 207 557 Receptor kinase-like Gene Family AT4G08850 25.762 1.68e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02065 - - gmx:100781571 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02065 01 45980509 45993420 Car01g02065 01 45980509 45993420 ECH