Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02060 ATGAGGGGTTCTTTGGGTGCTGTAGTAGGAAGGTACACATCAAGTGATGGAACTTCAACTATCCATATGGGTGGAAATGGGATCATAAGACATAACAGGAAATGCAGAGACATTGCTTTTCTCGTCATCTTTATTGCCTTTTGGGTTTCCATGATTGTCAACTCCAGCTTTGCTTTCAACAAAGGAAACCCATTAAGGCTTACATATGGGCTAGACTACAAAGGAAATGTGTGTGGCGACAAGCATGCAGGCCTTCGTGAATTGGAGCTGAAATACTGGTTAAATCCTAATCAGGTGTACCAAACTGAATTGAAGGATAGTCAGTTTAAACTGGCCGACACCCGCAGTATATGCTTGTTGGACTGCCCTATTCCTTATGAAGATTCACTTACTTGGGTGTGTGATTATCCTGAAGGAGATATTCGTGTTTCAATGAATGATTGGATTGATTTGAACTATAATTATTATGAGTTCCTCACACAAGAAATGAAAAACTCCTCTCTTCAACTTCAGGGCCCTTGTTATCCTGTCATATTTCCTACTGTAAATGTTTATTGGAGTTGCCAATTCATTGCCAAAGCATCAAATGTGTCTTTAAAGCATTGGCAACAGATGGGTGGAGTTAACATTAATGAAGGCATTGTCATTGATAAGTCCATTCACAAGAGTATCAATTCTCAGTCAGCTGTCTTCAAGAGATACATGTCTGACATAGGAAAGGCATGGCCTGTGCTGATTGTTTGTGGTGGGATTTTACCTTTGTTTCTCTCTGTGATTTGGCTGCTGCTGATTCGGCATTTCGTTGCTGCAATGCCTTGGATAACTGTGGTTTTCTTTGATGTTCTCATAGTATCAGTTACAATGTTCTACTACCTAAAAGTTGGATGGATAGGAAATGATGCTATAACGCCCATCATCGGCGAGCATGATCCTTACTTTCATATATATGGAAGGGAGCTGACTCATCTACATGTTGTCACTGTCCTTATGACTTTTATTATGGTTGTTTCCGTTCTTACATCAATTGCTATTGTCCGGCGCATCCTTATGGCAACTTCTGTTGCTGCAAAAGTGATAGGAGAAGTTCAAGCACTTATTGTTTTCCCAATCATACCATATGGTATCCTTGCAGTGTTCTACATGTTATGGATTTCGGTTTTTCTCCATTTATTCAGCTCCGGTCAGGTTGTTCAGAATGACTGCCACTCTAACTGCTGCTCGTATGAACTCACGGAAAAGAGGGTGATCTGCGATCGTTGTTGTGGATATAGTGTCCGTTACACACCACACATTGGAGTCGCCATCCTCTTTCACCTTTTTGGTTGTTATTGGGTTACACAATTTCTCATAGCATGCTCATCAACAGTGATTGCTGGATCCGTCGCCTCTTATTATTGGGGCCGTGGTGAAGAATCTCCAGAAATTCCTTTTCTTTCCGTCTTTTTGTCCATGAAGAGGCTTATGCGTTACAGTCTTGGTTCTCTGGCTCTTGGCTCTCTGACTGTATCATTTGTAGAATCAATCCGCTTTCTGCTTGAATCTATTCGACGCAAACTGAAAGTCACCAGTCATGTGCCTGACAACAGGATTGGGAAGGCTGCATACCATTCGTCGCTACTTTTTCGAAGGTGTATTGAGTGGACCATCAAATCATTCAATCGAAATGCTTATATCATGATTGCTATAAGTGGTAAAAGTTTCTTTGGAGCTTCAGCTATTGCAACAGATTTGATTATGAATAACATCCTCCGGATCGGGCGTGTCAATGTGATTGGAGATGTTATCTTGTTCCTCGGAAAACTATGTGTTTGCTGGGCTCTTGGATATATTGTTGCAACTCTTTTCTTTGGAGTTATAGAGATGTCAATTGACACCATCATTCTCTCATACTGTCAGGATTCTGAAGAGCATGGAACAGCACAATATGCTCCTCCGCTTCTCATTGAAACTCTCAATGATCAAAATGAGATGTAA 1974 0.4103 MRGSLGAVVGRYTSSDGTSTIHMGGNGIIRHNRKCRDIAFLVIFIAFWVSMIVNSSFAFNKGNPLRLTYGLDYKGNVCGDKHAGLRELELKYWLNPNQVYQTELKDSQFKLADTRSICLLDCPIPYEDSLTWVCDYPEGDIRVSMNDWIDLNYNYYEFLTQEMKNSSLQLQGPCYPVIFPTVNVYWSCQFIAKASNVSLKHWQQMGGVNINEGIVIDKSIHKSINSQSAVFKRYMSDIGKAWPVLIVCGGILPLFLSVIWLLLIRHFVAAMPWITVVFFDVLIVSVTMFYYLKVGWIGNDAITPIIGEHDPYFHIYGRELTHLHVVTVLMTFIMVVSVLTSIAIVRRILMATSVAAKVIGEVQALIVFPIIPYGILAVFYMLWISVFLHLFSSGQVVQNDCHSNCCSYELTEKRVICDRCCGYSVRYTPHIGVAILFHLFGCYWVTQFLIACSSTVIAGSVASYYWGRGEESPEIPFLSVFLSMKRLMRYSLGSLALGSLTVSFVESIRFLLESIRRKLKVTSHVPDNRIGKAAYHSSLLFRRCIEWTIKSFNRNAYIMIAISGKSFFGASAIATDLIMNNILRIGRVNVIGDVILFLGKLCVCWALGYIVATLFFGVIEMSIDTIILSYCQDSEEHGTAQYAPPLLIETLNDQNEM 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02060 657 Pfam Plasma-membrane choline transporter 329 605 IPR007603 GO:0022857|GO:0055085
Car01g02060 657 PANTHER PLASMA-MEMBRANE CHOLINE TRANSPORTER FAMILY PROTEIN 603 657 - -
Car01g02060 657 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 3 603 IPR007603 GO:0022857|GO:0055085
Car01g02060 657 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 603 657 IPR007603 GO:0022857|GO:0055085
Car01g02060 657 PANTHER PLASMA-MEMBRANE CHOLINE TRANSPORTER FAMILY PROTEIN 3 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02060 Car-Chr1 45941388 45945795 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02060 K15377 - gmx:100779959 1138.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02060 01 45941388 45945795 Car01g02060 01 45941388 45945795 ECH