Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02053 ATGGACCCTGACGTTGTTGAGATTCCTCCTCCAATTCACCATCACCCTTCCAGATTCAAAAAACAGAAACAGACCATTGTGCATGATGTGATTGACATTGATGACGACGACGACGTCGTTTCTAATGATTTAGTGATAATTGCTGAAAAAGTTGGTAAACGTGACAAGGGGAAGACAATTGAAGCCGTTCATGAGGGTTATAGTGATCATCGAGCTATGTCTGGCTTGGAAAAATTTGGATCAGCTGGCGGGATTGAGTCTTCTAATGGCCACCCTTCAATATCACATAATTTAATCAACATTGATGGCCCTGGTTCTAATCTTTCATTTGATGACGATGACTACCTTGATATGTTGTCAGATGATTATGCGGATGTAGACGATTATGCTTTATTACAGGCACAGTTTGATAATGTGGATATACCTCCCGGAATCGAAGCACCTTTTACATGGTTGCCAGAATATGACCTAGGTTTGAAGAAGACCGGAAATAGTACATGCAATGCTAAAGATAACTCTAAAATCGAAGGATCTAAAATGGGTAGTTCTAGTTTGCAAATCAAAACGGATAATGTCGATCAATCTTCTGGAACAAACTTGTCTCAACCTGCCCCTAATAAGAAGAAATCAGCTGCATCACAGTGCAGTGGGCAGCGTGACTCAAATCATTCATCAGGGTCAGGGTTGTCTAAGTCTCGGAGGTTTATGAAATCATTCCACAGTAAAATGAAATCTGCTTTTTTTGGTTCAAAAAAACACGGTTCGGATGTCAATGCAGATACCATTATGGTACAACGTGGCGGTAAGACGCCGTATTCCCGGAAATTTGGAATTGCTAAGAAGGCAACTGGTAGTAGCAGTAGTTCGTTCCATTCAAATTTCATTGGACAGGATGGATCATTGCATCCTCCGGTAACTATTAATAGTTATAATACTGCGATTCCAACTCATGCTGGGTTGTTGACTAGTCATCCTAGTATTAACCCATTTTCTATTAATAATTATAACACTGCTAATCCAACTCATTATTTTGATGCTCCTCCTGAGCACGTCCCTCGGGTTCTCAAATCCACCAGAGATGGAGATGACAGAGCAACTGTGAATTCCCCAGATTTGATCATCACTGGTGAAACCGTAAATGAAACTCTGAGAAAATTTCGAAGTTTTAAGCATTTTGACACCGTCATCGACACTTCGGACCATTTCTTTATGAATTATAATTCCTCCACGAAGCAGAATCCAAAGAGTTGGGCTAAGAAAATCCAAGAAGAGTGGAAGATTTTGGAGAAGGATTTGCCAGATACAATATTTGTGAGAGTCTATGAATCAAGGATGGATCTCTTGAGGGCAGTGATTATTGGAGCAGAAGGGACTCCTTATCACGATGGTCTTTTCTTTTTCGATATCCACTTTCCAAGTGGCTATCCCAATGTACCCCCGctagtccactaccactctagaggtcttcgtctcaatccgaatttgtatgcgtgcggtaaagtatgcctcagtttacttaacacctggtctggcggcccaaatgagaaatggactcctggtgtttcgacaattctacaagttctcgtttcaatacaaggtctaatcttgaatgcaaagcctttcttcaatgaacctggatttgcaaatatgagtggctcggcaaatggcgaaaggaaagccctgcagtataatgaggatacattccttCTATCATTGAACACAATGATGTATACTATAAGAAAGCCTCGAAAGCATTTTGAGGACTTAGTTGTGGGGCATTTCTACAGCAGAGCACATGATATTCTGGTGGCATGTAAAGCATACATGGAAGGTGCTCAAGTTGGTTGTTTGGTGAAAGGGGGAGTTCAAGATGTTGATGAGGGTGACAAAAGCTGCTCCAATAAATTTAAATCTGGTTTAGTTGGATATGTGAATCCTCTTGTCAAAGAGTTTGAAAGAATTGGGGTTAAGGGCTGTGAGAAATTCATCTCGCTGCCAGCTACTACTACATGA 2013 0.3527 MDPDVVEIPPPIHHHPSRFKKQKQTIVHDVIDIDDDDDVVSNDLVIIAEKVGKRDKGKTIEAVHEGYSDHRAMSGLEKFGSAGGIESSNGHPSISHNLINIDGPGSNLSFDDDDYLDMLSDDYADVDDYALLQAQFDNVDIPPGIEAPFTWLPEYDLGLKKTGNSTCNAKDNSKIEGSKMGSSSLQIKTDNVDQSSGTNLSQPAPNKKKSAASQCSGQRDSNHSSGSGLSKSRRFMKSFHSKMKSAFFGSKKHGSDVNADTIMVQRGGKTPYSRKFGIAKKATGSSSSSFHSNFIGQDGSLHPPVTINSYNTAIPTHAGLLTSHPSINPFSINNYNTANPTHYFDAPPEHVPRVLKSTRDGDDRATVNSPDLIITGETVNETLRKFRSFKHFDTVIDTSDHFFMNYNSSTKQNPKSWAKKIQEEWKILEKDLPDTIFVRVYESRMDLLRAVIIGAEGTPYHDGLFFFDIHFPSGYPNVPPLVHYHSRGLRLNPNLYACGKVCLSLLNTWSGGPNEKWTPGVSTILQVLVSIQGLILNAKPFFNEPGFANMSGSANGERKALQYNEDTFLLSLNTMMYTIRKPRKHFEDLVVGHFYSRAHDILVACKAYMEGAQVGCLVKGGVQDVDEGDKSCSNKFKSGLVGYVNPLVKEFERIGVKGCEKFISLPATTT 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02053 670 MobiDBLite consensus disorder prediction 189 231 - -
Car01g02053 670 Pfam Ubiquitin-conjugating enzyme 421 541 IPR000608 -
Car01g02053 670 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 7 666 - -
Car01g02053 670 SMART ubc_7 419 576 - -
Car01g02053 670 MobiDBLite consensus disorder prediction 1 21 - -
Car01g02053 670 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 7 666 - -
Car01g02053 670 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 416 576 IPR000608 -
Car01g02053 670 CDD UBCc 419 545 IPR000608 -
Car01g02053 670 Gene3D Ubiquitin Conjugating Enzyme 376 653 IPR016135 -
Car01g02053 670 SUPERFAMILY UBC-like 405 584 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02053 Car-Chr1 45895141 45899726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02053 358 656 Miscellaneous Gene Families AT2G33770 48.867 1.06e-85 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02053 K10581 - gmx:100810772 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02053 01 45895141 45899726 Car01g02053 01 45895141 45899726 ECH