Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02040 ATGGCTGCTGCCACTAATTTTGGAACAACGTGGTGTTTAAGAAGAGTAGTAACTCATGCCTTTCATTCTCATAATCTCCGCAACAATGTCTCTTTTCAAACGAACCTTACCTTCCTTTCCACTTCTTCAGCTTCAACTGTAAGCCAGAGTGTACAAGCTTCAAGAGGAGAAGCTGATGTATTGCTCAACGGAGTTGGGGAAAAAAGTGTAGCAAATGAAGTGAAGCATGTTCTTGAGATGGCTAGACGAGCATCATTAAAACGAGAGATTCTCCATACAAATTTTCTAACTCCTCCAGTGCTAAAGGAATCTATGCAAGTATTGGAAAAATTAGCAGATATTAAAGCAATTGCTCAAGGAGGTTATCCGCAGGCTGAACGGTGCCGGATTTCTGTTGGACATCCAGATGAACTGACAAGTGATCCAGATATTATTTCGGCATCGAGCATTACAGGGAACTTCCAGTTTGAACCTTGCTCTCATGGTGACTTCCTCGGCTCAATTCTTGGTACAGGAATTTCCAGGGAAAAACTTGGAGATATTATATTGCAGGGAGAACAAGGTGCTCAGATAATTGTTGTACCAGAACTTGTTGAATTTCTTATGTCAGCACTGGATAAGGTTCGTAATGTTTCTGTAACTTGCACCAAGATACCATTAATTTCTCTTGATTATGAACCGCCAAGAACAAAGTCATTCAAAACTGTAGAAGCATCACTAAGAGTTGATGCAGTAGCTAGTGCAGGATTTAAAGTTTCACGTTCAAAGCTAGTTGACATGATCAGCAATGGCGATGTACGTATCAATTGGATACCTGTTACTACCAAAGGAACCACAATCAAGAGTGGCGATATTGTATCAGTTAGTGGATTGGGAAGATTAAAGATTGGAGAAGTAAACACCACAAAGAAAGGAAAGTTTGCAGTGGAACTCATCAGATATTTGTAG 948 0.4019 MAAATNFGTTWCLRRVVTHAFHSHNLRNNVSFQTNLTFLSTSSASTVSQSVQASRGEADVLLNGVGEKSVANEVKHVLEMARRASLKREILHTNFLTPPVLKESMQVLEKLADIKAIAQGGYPQAERCRISVGHPDELTSDPDIISASSITGNFQFEPCSHGDFLGSILGTGISREKLGDIILQGEQGAQIIVVPELVEFLMSALDKVRNVSVTCTKIPLISLDYEPPRTKSFKTVEASLRVDAVASAGFKVSRSKLVDMISNGDVRINWIPVTTKGTTIKSGDIVSVSGLGRLKIGEVNTTKKGKFAVELIRYL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02040 315 Pfam Putative RNA-binding domain in YlmH 148 220 IPR040591 -
Car01g02040 315 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 48 315 - -
Car01g02040 315 Gene3D - 67 134 - -
Car01g02040 315 Gene3D - 141 223 IPR012677 -
Car01g02040 315 Gene3D - 234 290 IPR036986 GO:0003723
Car01g02040 315 TIGRFAM PS_II_S4: photosystem II S4 domain protein 70 313 IPR017506 -
Car01g02040 315 ProSiteProfiles S4 RNA-binding domain profile. 240 306 - -
Car01g02040 315 SMART s4_6 240 302 IPR002942 GO:0003723
Car01g02040 315 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 48 315 - -
Car01g02040 315 SUPERFAMILY Alpha-L RNA-binding motif 99 302 - -
Car01g02040 315 CDD S4 241 290 - -
Car01g02040 315 Pfam S4 domain 241 286 IPR002942 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02040 - - gmx:100793767 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02040 01 45685562 45689305 Car01g02040 01 45685562 45689305 ECH