Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02020 ATGAAAGCTATAAAAACACTTTCCTGCGAAAACAACCAACGCATTATCGCAACCTTATTCAACAATCTCCAAACACCACGATCACCAAAATTTGATCGATTCCTTCATTCTCATCCCGAATCACCGCCAGCTTCATTCATCCAAAACCTTCTCAAATTCCGAAGAGACAAACCAACGCAACAAATCGAACATGCTCTCAACCTCTGCAAAATTCACCCCAACCACGAACTCGTCCTCGAAGTCTTGCAACGTCACCGTTCCGATTGGAAACCCGCGTTCACTTTCTTCAAATGGGTCTCCAAAACCAACAACTACACACCCAGTTGCCACGTGTATAACGAGATTCTCAACATCCTCGGTAAAATGAAGCGTTTTGAGGAGTTACACCAAGTGCTTGACGAAATGTCGCAACGAAAAGAACTCGTAAATGAAGAAACTTTTTCCATTTTGATTCGTAGGTTTGTGGCTGCACATAAAGTGGAGGAAGCAATTAACATGTTCCACAGAAGGGAAGAGTATGGTTTGAACAATGAGTTTGATTCAGAAGCTTTTCGTACTCTCTTGATGTGGCTGTGTAGGTATAAACACGTTGAAGAAGCAGAAACTTTGTTTCATAGTAAGATGAACAAGTTTCAGCTTTATCATGATATAAAAACTTGGAATGTAATTCTCAATGGTTGGTGTGTTTTAGGGAATACACATGAAGCTAAGAGGTTATGGAAAGATATAATAAGTTCTAAATGCAAGCCTGATATTTTCACCTATGCAACTTTCATTAAGGCGATGACGAATAAAGGGAAATTGGGAACAACTTTAAAGTTGTTCAATCGTATGTGGAAAGATGAGAGTTGTAAACCTGATGTTGTGATATGCAATTGTGTAATTGACGGTCTTTGTTTTAAGAAGAGGATTCCTGAGGCGTTGCAGGTTTTTCGTGATATGAAGGAACGAGGTTGTCAGCCGAATGTAGCTACTTATAATTCGTTGATTAAGCATCTTTGTAAGATAAGGCGAATGGATAAGGTTTATGAACTGGTAGAGGATATGGAGAGGAGGAATGAGGGTTGTTTGCCTAATGAAGTTACTTATAGTTACTTGCTTAAGTCGCTGAAGACGCCTCAGGAAATTCCTAGGGTTTTGGAGGCAATGGAGAGAAATGGGTGTGCAATGAGTGACGATGTTTACAATTTGGTCTTGAGGTTGTATATGAAATGGAATGATCTTGATGGATTGAGAAAAACATGGGAAGAAATGGAGAGGAATGGATTGGGACTAGACAGACGATCGTATACCATCATGATTCATGGACATTATGAAAATGGGAGGATAAAAGATGCTATGCGTTATTTCAAGGAGTTAACGTCGAAGGGGATGGTGCCGGAGCCAATAACCGAGAAACTAATGATTTCCATGAACCCTCAGTTGACGGAGAGAACGGGAGAACAAGAAGGAATTGAAGGAGATGAGTCTAATGTCTGA 1479 0.4016 MKAIKTLSCENNQRIIATLFNNLQTPRSPKFDRFLHSHPESPPASFIQNLLKFRRDKPTQQIEHALNLCKIHPNHELVLEVLQRHRSDWKPAFTFFKWVSKTNNYTPSCHVYNEILNILGKMKRFEELHQVLDEMSQRKELVNEETFSILIRRFVAAHKVEEAINMFHRREEYGLNNEFDSEAFRTLLMWLCRYKHVEEAETLFHSKMNKFQLYHDIKTWNVILNGWCVLGNTHEAKRLWKDIISSKCKPDIFTYATFIKAMTNKGKLGTTLKLFNRMWKDESCKPDVVICNCVIDGLCFKKRIPEALQVFRDMKERGCQPNVATYNSLIKHLCKIRRMDKVYELVEDMERRNEGCLPNEVTYSYLLKSLKTPQEIPRVLEAMERNGCAMSDDVYNLVLRLYMKWNDLDGLRKTWEEMERNGLGLDRRSYTIMIHGHYENGRIKDAMRYFKELTSKGMVPEPITEKLMISMNPQLTERTGEQEGIEGDESNV 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02020 492 Pfam PPR repeat 394 423 IPR002885 -
Car01g02020 492 Pfam PPR repeat 429 457 IPR002885 -
Car01g02020 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 352 IPR002885 -
Car01g02020 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Car01g02020 492 Gene3D Tetratricopeptide repeat domain 353 481 IPR011990 GO:0005515
Car01g02020 492 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 10 492 - -
Car01g02020 492 TIGRFAM PPR: pentatricopeptide repeat domain 394 426 IPR002885 -
Car01g02020 492 TIGRFAM PPR: pentatricopeptide repeat domain 289 323 IPR002885 -
Car01g02020 492 TIGRFAM PPR: pentatricopeptide repeat domain 111 143 IPR002885 -
Car01g02020 492 TIGRFAM PPR: pentatricopeptide repeat domain 253 288 IPR002885 -
Car01g02020 492 TIGRFAM PPR: pentatricopeptide repeat domain 219 252 IPR002885 -
Car01g02020 492 TIGRFAM PPR: pentatricopeptide repeat domain 325 359 IPR002885 -
Car01g02020 492 TIGRFAM PPR: pentatricopeptide repeat domain 429 460 IPR002885 -
Car01g02020 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Car01g02020 492 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 10 492 - -
Car01g02020 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 286 IPR002885 -
Car01g02020 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Car01g02020 492 Gene3D Tetratricopeptide repeat domain 280 352 IPR011990 GO:0005515
Car01g02020 492 Gene3D Tetratricopeptide repeat domain 209 279 IPR011990 GO:0005515
Car01g02020 492 Gene3D Tetratricopeptide repeat domain 47 208 IPR011990 GO:0005515
Car01g02020 492 Pfam PPR repeat family 286 335 IPR002885 -
Car01g02020 492 Pfam PPR repeat family 216 262 IPR002885 -
Car01g02020 492 Pfam PPR repeat family 107 154 IPR002885 -
Car01g02020 492 Coils Coil 125 145 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02020 111 470 Glycosyltransferase AT1G05670 21.945 7.46e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02020 - - cam:101502395 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02020 01 45444785 45446592 Car01g02020 01 45444785 45446592 ECH