Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02007 ATGAGAAAGATTGCAAAAGCACCATGCTTCATTCTCTTTCTTTATGTAGTAGCACTTCATGTTCAATGCCGTTCTCTTTACACAAAATTGATTTCTAATGGAGTTGATGATGTTCAATTAGAAGTAGAATCTAATGAAAAAGGGGTTGTTGAATTTGAATCATCTGATTCAGGGGAGTATTGTAAGCAAATGTATGGTTTCTTACCATGCTCTAATAATATTTTTGGTCACCTATTTCTTATTTTGGTTTATGAGTACTTGTTGTTCCATGGAGAATCATATTTGGCTGCTGGAGGTGAACAAATCTTTAAGATTCTTGGTCCAGGTGTCTTTGGTGCTAGTGTTTTTGATATTCTTGGTGCCCTTCCTGAGTCCTTAATTCTTGTTGTTACTGGACTTTCCAGTGATAAGGAAAGTGCACAAGAATATGCTTCCACTGGAGTTGGTTTGTTAGCTGGATCATCCATTTTGCTTCTCACACTTGTGTGGGGTACCTGTGTTATTGTTGGCAAGCAAAACTTGAAAAATGACTCATATTCATCAACAAGAACCATAAAACAATCTTTGATTGGTTATGGCATTACTATGGATGTAGACACAAGAAAGATGGCAAGAATAATGGTTTTCTCTGTTATACCACTCCTAATAATGCAAATGCCTACATTGTTGCATTTCTCTTCCACACCACGCAATGTTACCTTGATGATTTCTCTCATCATTGCTGTCACTTTTCTCATCTCATATTTCATTTATCAGATCTTTAAACCTCAAATAGAGAAAACAAGACTAGAATACATAAAACATGATGATTTAATATTAAGAATTTTTCAACGTGTTGAAAAGCAAACTCTTCAAAAAATCCTAGCTGAGGATGGAACTCCCAATGTAACTGCCATAAGTGGATTATACAATGAATTCAGTCAACATGGAGGAAAGCATTTATTAGCTTCTGAATACCTTCCTAAAGAATCTATGAACAAAATGTATCAGACATTTATCAAGCCGTGGATCGAACACGTACGAAAAGAACGCGAATTGAAGGGACATCTTATTTCTGGAGTCTTAAATCATGCTCAGAATGATATGGTTGGTAGGATGCTCAAAGATGATGGCACACCTGATAAAGATGCTATCAAAAGGTTGTTTGAGGAAGTTGATAGCAATAGTGATAAACATGTTTCGAGAATTGAGTTAGAGAAAGTAGTGAAGGATATTCAGTTTGGTAAGGTTGTAGATGCAGAGGAAGCAGTGACAAAACTCCTTCAAGATCTTGATGTCAATAGAGACGATGAAATTAGTGAGAATGAATTTGTTGATGGCTTCACCAAATGGATACACTCAAATTCAAATAAAACTGCTAGCTCTAAATCTTCATCTCATGGAACTCATCAAACATGGGAAGATGTTGAGAAGGTAATGGAAGAGAATCAATCAAAAGGGGTGTCTGCATGGTTAGAAGCTATAGCATATGTGGTGTTGGGAATTACTATGCTTTCACTTCTTGCTGAGCCCTTAATAGCAAGTGTCCAAAAATTCTCTGAATATGCAGGAATTTCATCATTTTTTGTCTCATTTATTTTAGTACCTTTAGCTACAAATTTTAGAGAAGCAACCTCAGCAATCAAAGAAGCTAGCCACAAGAAAAGTAGCAACACTTCTCACACAATGTATGAGATTTATGGAGCAGTGTTCATGAACAACATTCTTGGGTTTGTGGTGATCTCAATTCTTATATACATGAGAGATATCGCATGGGAATTTTCAGCTGATGTATTGGTGGTAGCAATTGTTTGTATTGTGATGGGCCTTGCTGCTACTTTTCGCAACACTTTTCCTCTTTGGACATCTTTCCCTGCATACCTCTTGTACCTATTATCATTGCTTTTGGTTTTTGTTCTTAAAGATGTTCTCAATTATGTTTAG 1923 0.3609 MRKIAKAPCFILFLYVVALHVQCRSLYTKLISNGVDDVQLEVESNEKGVVEFESSDSGEYCKQMYGFLPCSNNIFGHLFLILVYEYLLFHGESYLAAGGEQIFKILGPGVFGASVFDILGALPESLILVVTGLSSDKESAQEYASTGVGLLAGSSILLLTLVWGTCVIVGKQNLKNDSYSSTRTIKQSLIGYGITMDVDTRKMARIMVFSVIPLLIMQMPTLLHFSSTPRNVTLMISLIIAVTFLISYFIYQIFKPQIEKTRLEYIKHDDLILRIFQRVEKQTLQKILAEDGTPNVTAISGLYNEFSQHGGKHLLASEYLPKESMNKMYQTFIKPWIEHVRKERELKGHLISGVLNHAQNDMVGRMLKDDGTPDKDAIKRLFEEVDSNSDKHVSRIELEKVVKDIQFGKVVDAEEAVTKLLQDLDVNRDDEISENEFVDGFTKWIHSNSNKTASSKSSSHGTHQTWEDVEKVMEENQSKGVSAWLEAIAYVVLGITMLSLLAEPLIASVQKFSEYAGISSFFVSFILVPLATNFREATSAIKEASHKKSSNTSHTMYEIYGAVFMNNILGFVVISILIYMRDIAWEFSADVLVVAIVCIVMGLAATFRNTFPLWTSFPAYLLYLLSLLLVFVLKDVLNYV 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02007 640 ProSitePatterns EF-hand calcium-binding domain. 386 398 IPR018247 -
Car01g02007 640 ProSitePatterns EF-hand calcium-binding domain. 425 437 IPR018247 -
Car01g02007 640 SUPERFAMILY EF-hand 371 448 IPR011992 -
Car01g02007 640 Pfam Sodium/calcium exchanger protein 488 631 IPR004837 GO:0016021|GO:0055085
Car01g02007 640 Pfam Sodium/calcium exchanger protein 91 249 IPR004837 GO:0016021|GO:0055085
Car01g02007 640 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 9 318 - -
Car01g02007 640 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 484 639 - -
Car01g02007 640 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 328 461 - -
Car01g02007 640 ProSiteProfiles EF-hand calcium-binding domain profile. 373 408 IPR002048 GO:0005509
Car01g02007 640 SMART efh_1 416 444 IPR002048 GO:0005509
Car01g02007 640 SMART efh_1 377 405 IPR002048 GO:0005509
Car01g02007 640 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 328 461 - -
Car01g02007 640 ProSiteProfiles EF-hand calcium-binding domain profile. 412 447 IPR002048 GO:0005509
Car01g02007 640 CDD EFh 378 442 IPR002048 GO:0005509
Car01g02007 640 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 484 639 - -
Car01g02007 640 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 9 318 - -
Car01g02007 640 Pfam EF-hand domain pair 376 439 IPR002048 GO:0005509
Car01g02007 640 Gene3D - 301 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02007 Car-Chr1 45264849 45270469 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02007 28 633 EF-hand Containing Proteins AT1G53210 35.784 3.43e-113 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02007 - - gmx:100799062 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02007 01 45264849 45270469 Car01g02007 01 45264849 45270469 ECH