Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02002 ATGTCTCTCTCTTTCACTTTCCCTCCCTCTTCCCGCCGGCACCACCGCCGGCACCGCAACCACACACTTTTTCATTTTCTTTTCCTCGCTGTCGCTGCAATCCTCTGCAGTCACGCCCACGCTCGCTTCCTTACACCCGATCTAGTTTCCGATGGTTGGAGTAATGTTCTCAGACTCCCCACGGATGAATCAACCTGCGAGGAGACCTACGGATTCTTACCGTGCACCACCACCATTCTTGGAAACTTGTTTCTCATCTTGGTCTATGGTTTCCTCATGTATACTGCTGCTACTTTTTTATCTAACGGTAGTGAACTCTTGCTTGAGATCTTAGGTCCCGGCATTGTTGGTGGATTGTTTCTTCCTGTACTCGGTGCTCTCCCTGATGCAATGCTCATTCTCGTGTCTGGGCTTTCAGGAAGTACAGAAACTGCTCAAAGTCAGGTATCTGTTGGAATGGGACTGTTAGCTGGATCAACAGTGCTGCTTCTGACTATAATATGGGGAACTTGTGTTATTGTTGGCAAGTGTGACATTGAGGATTCAATTGCGATAGATTCACAAGACACTAGAGGCTTCAGTTTAACTGGTTCTGGTGTTAGCACTGATATTTGGACAAGTTATGCTGCAAGGATTATGGTTATATCTGTCATTCCATTTTTGATTGTTCAATTACCACAAATTCTCCATTCAACTTCTGGAAGGCACTTGGCAGTTTTGATTGGTCTTGCTGTCTCTATCTGTTTATTGATCTCTTATTGCCTTTACCAGATTTTCCAACCCTGGATACAAAGGAGAAAATTGGAATATATTAAACACAAACATGTTATTTTGGGACTTTTGAAACATTTGAAGATGCGTTCATTGGGAAGGCTGCTGAAAGATGATGGCGAACCAAATAAAGAAGTAATTAGAAAGTTGTTTACAACAATTGATGAAAATAAAGATGGACATCTTACTCATGGTGAAATGAGAGCACTGGTCGTTGGAATTCAATTTGAGGAGATAGACCTGGATCATGACGACGCTGTGAAAAGAATAATGGTAGATTTTGATACTTCTCGTAATCAACTTGTCGACGAAGAAGAATTTGTTAATGGTGTCTGTAGATGGCTTCAAACAGCCAGGCGTTCTAAAGCTGCATCTGGTGATGCTGGTCCACACACAATGAAGTTTTTAAGTGATTTTCACACAGAAACAAGGAGGGAACACGATCTTCTGGACGTGGGGGGTCAGAGTGATGAAGTCGAAGAGGGTGTTGAGAATGCTAGATGGATTTCCATAAAAGCAGTACTGCTTCTTCTGCTGGGTGCTATTATTGCAGCTGCATTTGCTGATCCTCTGGTTGATGCTGTCGATAACTTTTCTGAAGCTACAAGTATTCCAGCTTTCTTCATTTCCTTCATTTTTCTACCTCTTGCAACCAATTCAAGTGAAGCAGTATCAGCAATAATTTTCGCTAGTCGTGATAAGAGGCAAACAGCTTCATTAACATTTTCTGAGGTTTGTTTTCTTGTTTAA 1521 0.4214 MSLSFTFPPSSRRHHRRHRNHTLFHFLFLAVAAILCSHAHARFLTPDLVSDGWSNVLRLPTDESTCEETYGFLPCTTTILGNLFLILVYGFLMYTAATFLSNGSELLLEILGPGIVGGLFLPVLGALPDAMLILVSGLSGSTETAQSQVSVGMGLLAGSTVLLLTIIWGTCVIVGKCDIEDSIAIDSQDTRGFSLTGSGVSTDIWTSYAARIMVISVIPFLIVQLPQILHSTSGRHLAVLIGLAVSICLLISYCLYQIFQPWIQRRKLEYIKHKHVILGLLKHLKMRSLGRLLKDDGEPNKEVIRKLFTTIDENKDGHLTHGEMRALVVGIQFEEIDLDHDDAVKRIMVDFDTSRNQLVDEEEFVNGVCRWLQTARRSKAASGDAGPHTMKFLSDFHTETRREHDLLDVGGQSDEVEEGVENARWISIKAVLLLLLGAIIAAAFADPLVDAVDNFSEATSIPAFFISFIFLPLATNSSEAVSAIIFASRDKRQTASLTFSEVCFLV 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02002 506 ProSiteProfiles EF-hand calcium-binding domain profile. 299 334 IPR002048 GO:0005509
Car01g02002 506 Pfam Sodium/calcium exchanger protein 430 501 IPR004837 GO:0016021|GO:0055085
Car01g02002 506 Pfam Sodium/calcium exchanger protein 84 260 IPR004837 GO:0016021|GO:0055085
Car01g02002 506 SMART efh_1 303 331 IPR002048 GO:0005509
Car01g02002 506 SMART efh_1 343 371 IPR002048 GO:0005509
Car01g02002 506 ProSitePatterns EF-hand calcium-binding domain. 312 324 IPR018247 -
Car01g02002 506 CDD EFh 304 368 IPR002048 GO:0005509
Car01g02002 506 ProSitePatterns EF-hand calcium-binding domain. 352 364 IPR018247 -
Car01g02002 506 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 33 502 IPR004713 GO:0006812|GO:0008324|GO:0016021
Car01g02002 506 PANTHER SODIUM/CALCIUM EXCHANGER NCL 33 502 - -
Car01g02002 506 Pfam EF-hand domain pair 302 366 IPR002048 GO:0005509
Car01g02002 506 Gene3D - 256 386 - -
Car01g02002 506 SUPERFAMILY EF-hand 298 373 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02002 Car-Chr1 45177491 45183713 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02002 39 503 EF-hand Containing Proteins AT1G53210 65.708 0.0 614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02002 - - gmx:100809896 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02002 01 45177491 45183713 Car01g02002 01 45177491 45183713 ECH