Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01976 ATGGATACCATCCCTACTTCAATCAACAGTGGTTTTGGATGGAAATCGTCCTCCTTTTTTCTACAATCCAATTCCTTCAACCTAATTTCAATTCCATTCAAACCAAAACCGTCTCTCACCAAGTTTACTCTCACTTGCTCTGCCGCCTCTTCTTCTTCTGATCCTCTCTTGGTGAAGGCTGCAAGGGGAGATCCTGTTAATCGTCCTCCGGCATGGATGATGCGTCAGGCAGGAAGGTACATGGCTGTTTACAGAAAGCTTGCCAAGAAACATCCGTCCTTCCGAGAGAGGTCTGAGACAACTGATCTCATTGTAGAAATTTCTTTGCAGCCTTGGAAAGCTTTCAGGCCCGATGGAGTAATTATTTTCTCCGACATCCTTACACCTCTACCTGCATTTGGGATTGACTTTGACATAGAAGATGTCAGGGGACCTGTAATACAGTCACCTATACGCTCTGAGGAGGGATTAAAGGTTTTGCACCCTATTGACTTCGACAAGCTTAGATTTGTAGGAGATTCACTTAAGATCCTACGGCAAGAGGTTGGTGGTCATGCTGCTGTTTTAGGTTTCGTCGGAGCACCTTGGACATTGGCAACATATATAGTTGAAGGAGGTACAACGCGCACATATACAACCATTAAGAGCATGTGCCATACAGCACCACACATACTGAAGACTCTGCTTTCTCATTTGACAAAGGCAATAGCAGATTACATCATTTTCCAAGTGGAATCTGGGGCTCACTGCATACAAATATTTGATTCGTGGGGTGGACAACTACCGCCTGAGATGTGGGAACGCTGGTCAAAGCCTTATATCAAAGAGATTGTAAATTTGGTCAAGAAAAAGTGCCCAGACACACCACTTGTTCTTTATATAAATGGAAATGGTGGCCTTCTCGAGCGTATGATAGATACTGGAGTTGATGTTATTGGACTCGATTGGACAGTGGATATGGCTGACGGTAGAAGAAGATTAGGTAGCGGAATAGGCGTGCAAGGAAATGTCGACCCTGCTTACTTATTCTCTCCTCTTACTGCCCTGACCGAAGAAATTCAGAGGGTTGTGCGGTGTGCGGGACCTAAACAACACATCCTTAATCTTGGGCATGGTGTTCTTGTTGGAACACCTGAAGAAGCCGTTGCACATTTCTTTGAAGTAGCCAGGAGCTTGAAGTTTGACACAGTCTCTCAAAATAACACTGCAAGTGTAGTTTGA 1221 0.4455 MDTIPTSINSGFGWKSSSFFLQSNSFNLISIPFKPKPSLTKFTLTCSAASSSSDPLLVKAARGDPVNRPPAWMMRQAGRYMAVYRKLAKKHPSFRERSETTDLIVEISLQPWKAFRPDGVIIFSDILTPLPAFGIDFDIEDVRGPVIQSPIRSEEGLKVLHPIDFDKLRFVGDSLKILRQEVGGHAAVLGFVGAPWTLATYIVEGGTTRTYTTIKSMCHTAPHILKTLLSHLTKAIADYIIFQVESGAHCIQIFDSWGGQLPPEMWERWSKPYIKEIVNLVKKKCPDTPLVLYINGNGGLLERMIDTGVDVIGLDWTVDMADGRRRLGSGIGVQGNVDPAYLFSPLTALTEEIQRVVRCAGPKQHILNLGHGVLVGTPEEAVAHFFEVARSLKFDTVSQNNTASVV 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01976 406 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 189 205 IPR000257 GO:0004853|GO:0006779
Car01g01976 406 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 39 403 - -
Car01g01976 406 TIGRFAM hemE: uroporphyrinogen decarboxylase 57 390 IPR006361 GO:0004853|GO:0006779
Car01g01976 406 Hamap Uroporphyrinogen decarboxylase [hemE]. 53 393 IPR006361 GO:0004853|GO:0006779
Car01g01976 406 SUPERFAMILY UROD/MetE-like 56 393 IPR038071 -
Car01g01976 406 Pfam Uroporphyrinogen decarboxylase (URO-D) 56 391 IPR000257 GO:0004853|GO:0006779
Car01g01976 406 CDD URO-D 59 391 IPR006361 GO:0004853|GO:0006779
Car01g01976 406 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 70 79 IPR000257 GO:0004853|GO:0006779
Car01g01976 406 Gene3D - 45 394 IPR038071 -
Car01g01976 406 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 1, CHLOROPLASTIC 39 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01976 Car-Chr1 44825773 44829305 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01976 K01599 - gmx:100807032 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01976 01 44825773 44829305 Car01g01976 01 44825773 44829305 ECH