Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01909 ATGATGTCTTTTACAAGCAAAAGTATTGAGTTTTTTGGGAAAAACTTGGTTTCTTGTGGTTGTTCTTCCAATGCTTCTTTTGATAGGAATAAGGTGAGGAATTATGGAAAAGTTAATTCTAAAGGATGTGGAAATGGAGCTCGTAAATTGATTTGTTGTAAGAAGAAGAACACTACTCAATATCGTGTTTCTTCTATGGAGACTGCAGAACCTACTTTGAATGGTGGGGCTCAAGCAATTAAAGACCTTGCAAAAGGATTGAACTTGAAGAGTTATTCAGAAACCCCTATTTCACCTAATAGGTTGTTTGAAGTAGTTTCTGATGATCTTCAAACACTCAATAAAAATCTTCAGTCTATTGTAGGGGCAGAAAATCCAGTTTTAATATCTGCAGCTGAGCAGATCTTTAGTGCTGGTGGGAAGAGGATGAGACCTGCTCTCGTGTTCTTGGTGTCAAGGGCGACTGCAGAGCTACTTGGCTTGGAGGATATTACTGTAAAGCATCGACGTTTAGCTGAGATAATTGAAATGATTCATACTGCAAGTTTGATACATGATGATGTGTTAGATGAGAGTGACCTAAGAAGAGGGAAGGAAACTGTTCATCAAATGTTTGGAACAAGAGTTGCAGTGCTGGCCGGAGACTTCATGTTTGCGCAGTCATCATGGTATCTCGCCAACCTTGAAAATATCGAAGTCATTAAACTTATCAGCCAGGTGATTAAAGATTTTGCTAGTGGAGAAATAAAGCAGGCTTCTAGCTTGTTCGATTGCGATGTTCAACTCGACGAGTATCTAATCAAGAGTTATTACAAGACAGCTTCTTTAATTGCTGCCAGTACAAAAGGAGCTGCAGTTTTCAGTGGTTCTGACAGTAACATCACCGAGAAAATGTACGAATACGGAAAGAATCTCGGTCTATCCTTCCAAGTTGTGGACGACATATTGGATTTCACACAATCAGCAGAGCAACTCGGAAAGCCTGCTGGCACTGACCTTGCCAAAGGTAACTTGACTGCTCCAGTAATCTTTGCATTGGAGAAAGAACCGAAATTGAGGGATATCATCGAATCTGAGTTTAGTGAGATCGGTTCACTCGATGAAGCCATTGCGTTGGTAAAGAGTTGTGGCGGAATTGAAAGAGCACAAGAGTTGGCGAAAGAGAAAGCTGATCTTGCTATTCAAAGTATTCAATGTCTTCCGCAAAGCGTGTATCGTTTAGCTCTCGAGGATATGGTGACATATAATCTTCAACGGATCGCGTAA 1266 0.4052 MMSFTSKSIEFFGKNLVSCGCSSNASFDRNKVRNYGKVNSKGCGNGARKLICCKKKNTTQYRVSSMETAEPTLNGGAQAIKDLAKGLNLKSYSETPISPNRLFEVVSDDLQTLNKNLQSIVGAENPVLISAAEQIFSAGGKRMRPALVFLVSRATAELLGLEDITVKHRRLAEIIEMIHTASLIHDDVLDESDLRRGKETVHQMFGTRVAVLAGDFMFAQSSWYLANLENIEVIKLISQVIKDFASGEIKQASSLFDCDVQLDEYLIKSYYKTASLIAASTKGAAVFSGSDSNITEKMYEYGKNLGLSFQVVDDILDFTQSAEQLGKPAGTDLAKGNLTAPVIFALEKEPKLRDIIESEFSEIGSLDEAIALVKSCGGIERAQELAKEKADLAIQSIQCLPQSVYRLALEDMVTYNLQRIA 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01909 421 SUPERFAMILY Terpenoid synthases 101 419 IPR008949 -
Car01g01909 421 Pfam Polyprenyl synthetase 127 372 IPR000092 GO:0008299
Car01g01909 421 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE 15 420 - -
Car01g01909 421 TIGRFAM prenyl_cyano: solanesyl diphosphate synthase 98 420 - -
Car01g01909 421 SFLD Isoprenoid Synthase Type I 132 415 - -
Car01g01909 421 PANTHER SOLANESYL DIPHOSPHATE SYNTHASE 2, CHLOROPLASTIC 15 420 - -
Car01g01909 421 ProSitePatterns Polyprenyl synthases signature 1. 183 197 IPR033749 -
Car01g01909 421 CDD Trans_IPPS_HT 123 419 IPR000092 GO:0008299
Car01g01909 421 ProSitePatterns Polyprenyl synthases signature 2. 305 317 IPR033749 -
Car01g01909 421 Gene3D Farnesyl Diphosphate Synthase 98 420 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01909 Car-Chr1 43607417 43611402 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01909 K05356 - gmx:100783538 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01909 01 43607417 43611402 Car01g01909 01 43607417 43611402 ECH