Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01622 ATGTATTCTGTGACGCCTCCACCTCTCTCATTCTCATGTTATCTCCACAACCACAACCTTCATCTTCACAACATAACCATTCGGAAACCAAAAATCAACACCAAAACCCCCTTTCCTTCATTTACAACTGCAAAATCATCCCTCTTATCTTCTCCCACAATCTCATTACACAAAACAGAGAAAAATGCCGCTAGTGAACCCTATTCTCAACAACGCTTTCACAATCTATGCGACACAGGAAACCTCAACGAAGCATTCAACTTCCTTCAATCAAATATCGACGACGTCGTTTCATTTTCCAACGTTAAACCAGAAGACGCCATTGGCCACTTATTACAAGCATGCGGGCGCCACAGAGACATCGAAGTCGGTCGAAAAGTTCACGAATTTGTTTCAACTTCGTCGCGTTTTCAAAACGACGTCATTCTCATCACTCGCATTGTTACCATGTACTCCAATTGCAGCTCTCCCAATGATTCTCGTTTTGTCTTCGACGTTTCGAGGAAAAAGAATCTCTTTCTCTGGAACGCGCTTCTCAGCAGTTACTCCAGGAACGCGCTTTTCCACGAAGCGGTTTGTCTGTTCGTTGAGTTAATTTCCGCGACGGAGTTTGCTCCGGATAATTTCACGTTGCCGTGCGTTATCAAGGCTTGCGCGGGGCTTTCAGATGCTAGACTTGGAGAAACGATTCACGCGTTTGCGTTGAAGACGAGGCTTTTCTCCGACGCGTTTGTCGGGAACGCGTTGATTGCTATGTACGGGAAGTTTGGGGTTTTGGAGAGTGCTGTTAAGGTATTTGAGAAAATGCCTGAGAGAAACTTGGTTTCGTGGAACTCAATTATGTATGCGTATTCTGAGAAGGGGGTTTTTGAAGAGAGCTATGATTTGTTTAAGGGACTGTTGAATGGTAAAGAAGGCTTAGTACCTGATGTTGCTACTATGGTGACAATAATACCTATCTGTGCAGCACAAGGTGAAGTGAAATTAGGGGTGGTGCTTCATGGTTTGGCTTTGAAACTTGGCCTTGGTGGAGAATTGAAGGTGAATAATTCCCTTACAGATATGTATTCGAAATGCGGTTACTTATGTGAAGCGCGGGTCCTGTTTGATATGAATGAGGATAAGAATGTTGTTTCTTGGAACTCTATGATTGGTGGCTACTCTAAGGAAGGAGATTTTCGTGGAACGTTTGACTTGTTAAGGAAGATGCAGATGGAAGAGAAAGTAAAGGTGAATGAGGTGACACTGTTGAATGTTTTGCCGGCTTGTGTGGAGGAGATTCAGTTTTTGAACTTAAAGGAGATTCATGGTTATGCTGTAAGGCACGGATTCATTCAGAGTGATGAATTGGTGGCAAATGCTTTTGTTGCTGGATATGCTAAGTGTGGTTCATTGGATTATGCTGAGGGTGTGTTTTGTGGTATGGAGTCGAAAACAGCGAGTTCTTGGAATGCGATGATTGGCGGTCATGCACAGAATGGTTTTCCTAGAAAGGCATTGGATTTTTACCTTTTGATGAGAGATTTTGGATTGGATCCTGATTGGTTTACAATTGGTAGCCTTCTTTCAGCTTGTGCTCGATTGAAATCCCTTTCTTGTGGGAAAGAGATTCATGGTTTTATGTTGCGTAATGGTTTACAATTGGACGAATTCATTGGGATATCGTTAGTCTCACTTTATGTTCAATGTGGGAAAATGCTACCAGCAAAATTGTTTTTTGATAATATGGAAGAGAAAAGTTTAGTGTGCTGGAATACTATGATTAATGGCTTTTCACAAAACGAGCTTCCTTGTGATGCCCTTGATATGTTTCGTCAAATGCTTTCAAGTAAAATTTGGCCTGATGAGATTGCCATAATGGGTGCTCTGGGGGCTTGTTCGCAGGTGTCGGCACTGCGGCTGGGCAAAGAGCTTCACTGCTTTGCAATGAAAGCTCGTCTCATAGACGACAGCTTTGTTACTTGTTCATTGATAGACATGTATGCAAAAAGTGGATGCATGGAACAATCACAGAACATTTTTGACAGGGTACATAAGAAAGACGAAGCGTCATGGAATGTTTTAATTTCAGGATATGGAATTCATGGACATGGACTGAAGGCTATAGAGCTTTTTAAATCGATGCAAAGTGCTGGCTGCAGACCAGATTCTTTTACATTTGTAGGATTGTTAATGGCATGTAACCATGCTGGTTTAGTAGCAGAAGGGTTAGAATATCTTAGTCAGATGCAGAGTTTGTTTGATATAAAGCCAAAATTACAGCATTATGCATGTGTGGTTGATATGCTTGGTCGCGCTGGACGATTGAATGAAGCTTTGAAGCTTGTAAATGAGCTACCAGATGAACCAGATTCCGGGATATGGAGTTCTTTACTCAGTTCATGTAGAAATTATGGGGATTTGGATATTGGCAAGGAAGTTGCGAAAAAGTTGTTAGAATTGGGACCAGACAAAGCTGAGAACTATGTATTGATATCAAATTTGTATGCTGGATTAGGAAAATGGGATGAGGTGAGAAAAGTGAGGCAAAAGATGAAAGATATTGGCCTTCAGAAAGATGCAGGTTGCAGTTGGATTGAAATAGGAGGAAAAGTTTATAGATTTGTTGTTGGTGATGGATCACTTTTGGAATCAAAGAAAATTCAGCAGACTTGGATTAAATTGGAGAAGAAAATGATCAAAATTGGATATGAACCAGACACAAGTTGTGTGCTTCATGAACTAGAAGAAGAGGAAAAGATTAAGATACTGAGGAGCCATAGTGAGAAGCTTGCAATTTCTTTTGGTTTATTAAATACGGCTAAAGGTACCACACTAAGGGTTTGCAAAAACCTACGCATTTGTGTTGACTGTCACAATGCTATTAAGTTAGTATCAAAGGTTGCTAAAAGGGAGATTATTGTTAGGGACAACAAGCGCTTTCATCATTTCAAAAAAGGATTTTGTAGCTGTGGAGATTACTGTTCATCATCTTCTTGCCATCATCCTCCATCTCCACCGTCTTCATCCTTCATTCACACCGTCAAATTTGCAGTAAAAACGAAAATCAAGTTCAACTCAAACACAACAAAGAGAAGGAACGAGATCAAGCTTTATTTATTTTATGTTGATGCAAATCTGTCAAAGTTGAGAAGTCAACACACTACTAAAAATGAAGAGGCAGCGAAAACAAATTGTCAACGGAAGATGAAACTTCCTTCCCATTGCTTGCTTTGA 3216 0.407 MYSVTPPPLSFSCYLHNHNLHLHNITIRKPKINTKTPFPSFTTAKSSLLSSPTISLHKTEKNAASEPYSQQRFHNLCDTGNLNEAFNFLQSNIDDVVSFSNVKPEDAIGHLLQACGRHRDIEVGRKVHEFVSTSSRFQNDVILITRIVTMYSNCSSPNDSRFVFDVSRKKNLFLWNALLSSYSRNALFHEAVCLFVELISATEFAPDNFTLPCVIKACAGLSDARLGETIHAFALKTRLFSDAFVGNALIAMYGKFGVLESAVKVFEKMPERNLVSWNSIMYAYSEKGVFEESYDLFKGLLNGKEGLVPDVATMVTIIPICAAQGEVKLGVVLHGLALKLGLGGELKVNNSLTDMYSKCGYLCEARVLFDMNEDKNVVSWNSMIGGYSKEGDFRGTFDLLRKMQMEEKVKVNEVTLLNVLPACVEEIQFLNLKEIHGYAVRHGFIQSDELVANAFVAGYAKCGSLDYAEGVFCGMESKTASSWNAMIGGHAQNGFPRKALDFYLLMRDFGLDPDWFTIGSLLSACARLKSLSCGKEIHGFMLRNGLQLDEFIGISLVSLYVQCGKMLPAKLFFDNMEEKSLVCWNTMINGFSQNELPCDALDMFRQMLSSKIWPDEIAIMGALGACSQVSALRLGKELHCFAMKARLIDDSFVTCSLIDMYAKSGCMEQSQNIFDRVHKKDEASWNVLISGYGIHGHGLKAIELFKSMQSAGCRPDSFTFVGLLMACNHAGLVAEGLEYLSQMQSLFDIKPKLQHYACVVDMLGRAGRLNEALKLVNELPDEPDSGIWSSLLSSCRNYGDLDIGKEVAKKLLELGPDKAENYVLISNLYAGLGKWDEVRKVRQKMKDIGLQKDAGCSWIEIGGKVYRFVVGDGSLLESKKIQQTWIKLEKKMIKIGYEPDTSCVLHELEEEEKIKILRSHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKVAKREIIVRDNKRFHHFKKGFCSCGDYCSSSSCHHPPSPPSSSFIHTVKFAVKTKIKFNSNTTKRRNEIKLYLFYVDANLSKLRSQHTTKNEEAAKTNCQRKMKLPSHCLL 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01622 1071 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 427 976 - -
Car01g01622 1071 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 328 423 - -
Car01g01622 1071 Gene3D Tetratricopeptide repeat domain 432 529 IPR011990 GO:0005515
Car01g01622 1071 Gene3D Tetratricopeptide repeat domain 340 431 IPR011990 GO:0005515
Car01g01622 1071 Gene3D Tetratricopeptide repeat domain 530 632 IPR011990 GO:0005515
Car01g01622 1071 Gene3D Tetratricopeptide repeat domain 228 332 IPR011990 GO:0005515
Car01g01622 1071 Gene3D Tetratricopeptide repeat domain 98 227 IPR011990 GO:0005515
Car01g01622 1071 Gene3D Tetratricopeptide repeat domain 633 746 IPR011990 GO:0005515
Car01g01622 1071 Gene3D Tetratricopeptide repeat domain 747 861 IPR011990 GO:0005515
Car01g01622 1071 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Car01g01622 1071 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Car01g01622 1071 Pfam PPR repeat 582 611 IPR002885 -
Car01g01622 1071 Pfam PPR repeat 174 200 IPR002885 -
Car01g01622 1071 Pfam PPR repeat 756 779 IPR002885 -
Car01g01622 1071 Pfam PPR repeat 275 298 IPR002885 -
Car01g01622 1071 Pfam PPR repeat 453 478 IPR002885 -
Car01g01622 1071 Pfam PPR repeat 247 273 IPR002885 -
Car01g01622 1071 Pfam DYW family of nucleic acid deaminases 896 987 IPR032867 GO:0008270
Car01g01622 1071 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 479 513 IPR002885 -
Car01g01622 1071 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 138 327 - -
Car01g01622 1071 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 138 327 - -
Car01g01622 1071 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 427 976 - -
Car01g01622 1071 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 328 423 - -
Car01g01622 1071 Pfam E motif 798 860 IPR046848 -
Car01g01622 1071 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 580 614 IPR002885 -
Car01g01622 1071 Coils Coil 1071 1071 - -
Car01g01622 1071 TIGRFAM PPR: pentatricopeptide repeat domain 582 615 IPR002885 -
Car01g01622 1071 TIGRFAM PPR: pentatricopeptide repeat domain 482 515 IPR002885 -
Car01g01622 1071 TIGRFAM PPR: pentatricopeptide repeat domain 378 412 IPR002885 -
Car01g01622 1071 TIGRFAM PPR: pentatricopeptide repeat domain 684 717 IPR002885 -
Car01g01622 1071 Pfam PPR repeat family 375 420 IPR002885 -
Car01g01622 1071 Pfam PPR repeat family 480 527 IPR002885 -
Car01g01622 1071 Pfam PPR repeat family 680 727 IPR002885 -
Car01g01622 1071 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 681 715 IPR002885 -
Car01g01622 1071 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 206 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01622 Car-Chr1 34576258 34583347 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01622 207 987 Glycoside Hydrolase AT3G49170 34.799 1.61e-154 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01622 - - ccaj:109818232 1390.94