Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01336 ATGTGGTTTTATAATTTCTGTGTATTTGATACTTACTCGATACTAGTGAAGTACTATGGTTTTTTATATTATTTTATTAAATCTTACCCAGTAGGACATGTATCTCTGTCACATAGTAGCCTTAAAAGTCAACATCATCATCATCAGATGAGTTTCAAGCTTCTTCTGGTTGTTATGTGTCTTTGGATTTGGTTTCTATCTTTGGCTTTTACAATTTCTGATGAAGGGTTGATGAGAGTTAGTCTAAAGAGAAGGAATTTAAACTTTCAAAGTCTTAATTCTTCAAGAATCAAAAGGGTAATTCATCAAAGAAATTTAGAGAGTGTTGATCAAAATTGTTGCAGTAAAGATGTTGTGTATCTTAAGAATTACCTTGATGTACAATATTTTGGGGAGATTGGTATTGGTTCACCACCACAGTACTTCAATGTTGTGTTTGATACTGGAAGCTCTAATCTTTGGGTTCCATCTTCCAAGTGCATCTTTTCAATTGCTTGCTATTTGCATTCCAAGTATAGGTCAAGGATATCTAGCACTTATAATGAAATTGGAACACCTTGCAAAATCCCTTATGATGATGGATACATTTATGGATTCTTCAGCCAAGATAATGTAAAAGTTGGGGATATCATTATTAAAGATCAAGAATTTTCTGAGATTATATGGGAAGCAAATTTAGCACTTTTAGCTTTTCCATTTGATGGAATACTTGGACTTGGTTTCCAGGGTATTTCAGTTGGAAAAGTCACACCAGTGTGGTATAATATGATAGAACAAGGACACATAAAGGACAGAGTTTTCTCTCTTTGGCTAAATCATGATCCAATGGCTGAGATAGGAGGTGAGATTGTCTTTGGTGGTGTGGACAAGAGGCATTTTAGAGGTGAACACACTTATGTTCCACTTTCTCAAAAGGGTTATTGGCAGATTGAAGTTGGAGATATTCTGCTTGGAAATAATACAACAGGTTTATGTGAGGGTGGCTGTGCTGCAATAGTAGACTCAGGGACATCTTTAATTGCTGGTCCAACTGGTGTTGTGACTCAAATTAACCATGCCATTGGAGCAGAAGGATATGTTAGTATTGAGTGCAAAAACATTGTCCAGAACTATGGGAATATGATATGGGAATCCTTGATTTCAGAGTTAAATCCTGAAATCTTATGTGTTGACATTGGACTCTGTTCAAATAATGGATTTCAAAGAATAGATGATGTAATTGAAACAGTGGTGCATAATGAAAATTTGGACAGACCCTTTTGTACTTTTTGCAATATGATTGTCCTTTGGATTCAAGTTCAGCTTAAGAAAAGCAATGTAAAGGAAAAAGTGTTAAAACATGTGGATGAGCTATGTGAGAGGCTCCCAAAACCAGTGGGACAAGCATTTATAAACTGCAATAGTATCTCAACTATGCCAGATATTACATTCACAATTGGAAACAAATTGTTTTCTCTCCCTCCAGAACAGTACATTCTTAGAGTTGATGAAGGTTCTGTCTGCTATAGCGGTTTTGTTGCTCTTGATGTGCCTTATCCACAAGGTCCTATCTGGGTTCTTGGGGAGATTTTCTTGGAGGCCTATCACACTGTGTTTGACTATGAAAATCTCCGTATTGGATTTGCAGAAGCTGCATAG 1638 0.3614 MWFYNFCVFDTYSILVKYYGFLYYFIKSYPVGHVSLSHSSLKSQHHHHQMSFKLLLVVMCLWIWFLSLAFTISDEGLMRVSLKRRNLNFQSLNSSRIKRVIHQRNLESVDQNCCSKDVVYLKNYLDVQYFGEIGIGSPPQYFNVVFDTGSSNLWVPSSKCIFSIACYLHSKYRSRISSTYNEIGTPCKIPYDDGYIYGFFSQDNVKVGDIIIKDQEFSEIIWEANLALLAFPFDGILGLGFQGISVGKVTPVWYNMIEQGHIKDRVFSLWLNHDPMAEIGGEIVFGGVDKRHFRGEHTYVPLSQKGYWQIEVGDILLGNNTTGLCEGGCAAIVDSGTSLIAGPTGVVTQINHAIGAEGYVSIECKNIVQNYGNMIWESLISELNPEILCVDIGLCSNNGFQRIDDVIETVVHNENLDRPFCTFCNMIVLWIQVQLKKSNVKEKVLKHVDELCERLPKPVGQAFINCNSISTMPDITFTIGNKLFSLPPEQYILRVDEGSVCYSGFVALDVPYPQGPIWVLGEIFLEAYHTVFDYENLRIGFAEAA 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01336 545 Pfam Saposin-like type B, region 2 363 395 IPR008138 -
Car01g01336 545 PRINTS Pepsin (A1) aspartic protease family signature 331 342 IPR001461 GO:0004190|GO:0006508
Car01g01336 545 PRINTS Pepsin (A1) aspartic protease family signature 135 155 IPR001461 GO:0004190|GO:0006508
Car01g01336 545 PRINTS Pepsin (A1) aspartic protease family signature 281 294 IPR001461 GO:0004190|GO:0006508
Car01g01336 545 PRINTS Pepsin (A1) aspartic protease family signature 518 533 IPR001461 GO:0004190|GO:0006508
Car01g01336 545 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 331 342 IPR001969 GO:0004190|GO:0006508
Car01g01336 545 Gene3D - 359 456 - -
Car01g01336 545 SUPERFAMILY Saposin 361 456 IPR011001 -
Car01g01336 545 Pfam Saposin-like type B, region 1 419 456 IPR007856 GO:0006629
Car01g01336 545 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 54 545 IPR001461 GO:0004190|GO:0006508
Car01g01336 545 SUPERFAMILY Acid proteases 58 544 IPR021109 -
Car01g01336 545 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 144 155 IPR001969 GO:0004190|GO:0006508
Car01g01336 545 Pfam Eukaryotic aspartyl protease 128 544 IPR033121 -
Car01g01336 545 Gene3D Acid Proteases 288 545 IPR021109 -
Car01g01336 545 ProSiteProfiles Peptidase family A1 domain profile. 129 542 IPR033121 -
Car01g01336 545 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 54 545 - -
Car01g01336 545 Gene3D Acid Proteases 77 287 IPR021109 -
Car01g01336 545 ProSiteProfiles Saposin B type domain profile. 417 458 IPR008139 -
Car01g01336 545 ProSiteProfiles Saposin B type domain profile. 359 399 IPR008139 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01336 Car-Chr1 18665909 18670371 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01336 K08245 - gmx:100500551 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01336 01 18665909 18670371 Car01g01336 01 18665909 18670371 ECH