Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01297 ATGAGAACGTCGTCGTTTGCTAAGTGTACCACTAGCGAATTAGACTTACCGGAAAATTTCGAAACATCATCGCCGACGGCGACCGGAAGACATGCTTACGGCGCAATGTTACCGGTTTTTCTCAACGATCTCCGTAGCAACCACCACAGAGAGCTCGTTGAGATAACCTTAGAGCTCGAAAACGACGCCGTCATTCTCCGCAACATTGCGGCGGCATCTTCCGCTCCGAACGCATCTCCGTCATCAAGTCACGACGCTGGAGATGAAGAAGTCGTCTCAAGTGTTGGCGTCGGCATTATGAGGAGTCTGTCAATTACGTCAAAGATTCGGAAGACGTTCCCGTGGCTGAGGTCGATGTCTTTGCGATCATCGACTTCGTCGTCGGAGAGTATCGCCGCGGTGGAGGATCCGATAACCACGGCGAGAAATGCACGGAGAATGAGAGCCGAACTTGAACGGACGAGATCGAATGCCGAAAGAGGTTTGAAAGGTTTGAGATTCATTAGTAAGTCTGGTGAAGCAAGTGATGAGTTATGGAGAAAAGTCGAAGAGAGGTTTGAATTTCTTGCTAAAGATGGTTTGCTCCATAGAGAAGACTTCGGTGAATGCATTGGAATGGAGGATTCGAAAGAATTTGCGGTAGGTATATTTGATGCATTAGCTAGGAGGAAGGAAAGAAAAACAATGAGCAAGATAACAAAAGAAGAGTTGCGTCACTTTTGGTTGCAAATTTCAACCCAAAGTTTTGATGCCCGCCTTCAAATTTTCTTTGACATGGCAGACAGTAATGAAGATGGAAGAATTACTAGGGAGGAAGTACAAGAGCTTATAATGCTCAGTGCTTCTGCAAACAAGCTATCGAAGCTAAAAGAACAAGCTGAAGGATACGCTGCCTTAATAATGGAAGAATTGGATCCAGAAAACTTGGGTTATATCGAGCTATGGCAGCTAGAAATGTTGTTACTAGAAAAAGACAGATACATGAACTACAGTAGACAACACAGCAGCACAAGTGTAGGCTGGAGTCAAAACATGACAAATTTGAAACCCAAAAATAAATTCCACAAAATCCGCAAGAAACTCCAATGTCTTGCATTAGAATATTGGAGGAGGGGTTGGATTTTGTTACTGTGGTTATTTACCACATCTTGTCTTTTTACCTGGAAATTTTACCAATACAAAAACAGAACAAGTTTCGAAGTCATGAGTTATTGTTTACCAATAGCCAAAGGTGCTGCAGAGACGTTGAAGCTCAACATGGCTCTCATCCTTTTACCTGTTTGTCGAAATACATTGACATGGCTTCGCTCCACAACAGTTAGGAAATTTGTCCCATTTGATGACAATATTAATTTTCATAAGATGATAGCATTTGCCATTGTTGTTGGAATAGTTGTCCATGCAGGCAACCATCTCGCATGTGATTTCCCTCTTCTCGTAAACTCATCTCCAGAGAAATTCTCACTAATATCTTCTGATTTCAACAACAAAAAGCCCACATACAAAACACTTTTGACTAATGTTGAAGGTGTGACTGGAATTACAATGGTTACTTTGATGGCTATATCTTTTACTTTAGCAACTCATAAATTCCGGAGAAATGCAGTAAGGCTTCCTCCACCCATCAATGCTTTGACAGGCTTTAATGCATTTTGGTATTCACACCACCTTCTTGGTCTTGTCTACATTCTTATGTTCATCCATGGTTCTTTCTTGAATTTAGCCCACAAGTGGTACCAGAAATCGACATGGATGTATATCTCTGTTCCGTTGTTGCTGTACATTGCAGAGCGTACTCTACGAACTCGTAGATCACACCATTATGCAGTAAAAGTTCTCAAGGTTTCAGTGCTACCAGGGAATGTATTTAGCTTAATCATGTCCAAACCAACTGGATTCAAATACAAAAGTGGCCAGTACATTTTTTTACAATGCCCAAAAATCTCTCCCTTTGAGTGGCATCCATTCTCCATTACATCAGCACCAGGAGACGAGTACTTAAGCGTTCACATTCGCACGGTAGGAGACTGGACGCAAGAAGTTAAGATACTTTTCACCGAAGATGACCACCCGCCTCCTGTTAACTGTCACGCAACATTCGGCGAACTAATTCAAATAGATCAAAGAGGACAGCCGAAGCTGCTCGTGGATGGTCCATACGGAGCTCCAGCACAAGATTACCAAAATTTTGATGTTCTACTTCTCATAGGATTAGGAATTGGAGCAACTCCCTTCATTAGTATTCTCAGAGATCTTCTGAATGACAAGCGAACGATTGACGAATTAACGGACTCAAACACAGAAACAAGTAAATCAGATGAGAGCTTCAATAGTTTCACATCTTTAAATGTAACACCAGGAAGAAATAAGAGATCACAAAGGACTACAAATGCTTACTTCTATTGGGTTACTAGGGAACCAGGATCTTTTGAATGGTTTAAAGGTGTAATGGATGAAGTTGCAGAAATGGACCACAAAGGTCTAATTGAACTGCACAATTATCTTACAAGTGTCTATGAAGAGGGTGATGCAAGATCAACCTTAATCACAATGATCCAAGCATTAAACCATGCCAAACATGGTGTTGACATTCTTTCAGGCACTCGAGTGAGGACACACTTTGCTAGGCCTAATTGGAAAGAAGTTTTCAATAAGATAGCCTCTAAACATCCGTATTCTACAGTAGGGGTGTTCTATTGTGGGATGCCAGTGCTGGCAAAGGAACTAAAAAAGCTATCGCTGGAGCTGACCCATAAGACAACCACACGCTTCAACTTTCACAAGGAGTACTTCTAA 2796 0.4181 MRTSSFAKCTTSELDLPENFETSSPTATGRHAYGAMLPVFLNDLRSNHHRELVEITLELENDAVILRNIAAASSAPNASPSSSHDAGDEEVVSSVGVGIMRSLSITSKIRKTFPWLRSMSLRSSTSSSESIAAVEDPITTARNARRMRAELERTRSNAERGLKGLRFISKSGEASDELWRKVEERFEFLAKDGLLHREDFGECIGMEDSKEFAVGIFDALARRKERKTMSKITKEELRHFWLQISTQSFDARLQIFFDMADSNEDGRITREEVQELIMLSASANKLSKLKEQAEGYAALIMEELDPENLGYIELWQLEMLLLEKDRYMNYSRQHSSTSVGWSQNMTNLKPKNKFHKIRKKLQCLALEYWRRGWILLLWLFTTSCLFTWKFYQYKNRTSFEVMSYCLPIAKGAAETLKLNMALILLPVCRNTLTWLRSTTVRKFVPFDDNINFHKMIAFAIVVGIVVHAGNHLACDFPLLVNSSPEKFSLISSDFNNKKPTYKTLLTNVEGVTGITMVTLMAISFTLATHKFRRNAVRLPPPINALTGFNAFWYSHHLLGLVYILMFIHGSFLNLAHKWYQKSTWMYISVPLLLYIAERTLRTRRSHHYAVKVLKVSVLPGNVFSLIMSKPTGFKYKSGQYIFLQCPKISPFEWHPFSITSAPGDEYLSVHIRTVGDWTQEVKILFTEDDHPPPVNCHATFGELIQIDQRGQPKLLVDGPYGAPAQDYQNFDVLLLIGLGIGATPFISILRDLLNDKRTIDELTDSNTETSKSDESFNSFTSLNVTPGRNKRSQRTTNAYFYWVTREPGSFEWFKGVMDEVAEMDHKGLIELHNYLTSVYEEGDARSTLITMIQALNHAKHGVDILSGTRVRTHFARPNWKEVFNKIASKHPYSTVGVFYCGMPVLAKELKKLSLELTHKTTTRFNFHKEYF 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01297 931 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 729 931 IPR039261 -
Car01g01297 931 PRINTS Cytochrome B-245 heavy chain signature 511 534 IPR000778 GO:0016020|GO:0016491
Car01g01297 931 PRINTS Cytochrome B-245 heavy chain signature 712 725 IPR000778 GO:0016020|GO:0016491
Car01g01297 931 PRINTS Cytochrome B-245 heavy chain signature 735 752 IPR000778 GO:0016020|GO:0016491
Car01g01297 931 Gene3D - 151 269 - -
Car01g01297 931 Pfam Ferric reductase NAD binding domain 730 913 IPR013121 GO:0016491
Car01g01297 931 Gene3D Translation factors 594 689 - -
Car01g01297 931 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 605 726 IPR017927 GO:0016491
Car01g01297 931 SUPERFAMILY EF-hand 167 334 IPR011992 -
Car01g01297 931 ProSitePatterns EF-hand calcium-binding domain. 261 273 IPR018247 -
Car01g01297 931 SFLD NADPH oxidase subgroup (NOX) 140 931 - -
Car01g01297 931 Pfam Respiratory burst NADPH oxidase 151 251 IPR013623 GO:0004601|GO:0050664
Car01g01297 931 ProSiteProfiles EF-hand calcium-binding domain profile. 248 283 IPR002048 GO:0005509
Car01g01297 931 Pfam FAD-binding domain 608 723 IPR013112 GO:0016491
Car01g01297 931 PANTHER RESPIRATORY BURST OXIDASE HOMOLOG PROTEIN E 41 931 - -
Car01g01297 931 CDD NOX_Duox_like_FAD_NADP 612 883 - -
Car01g01297 931 PANTHER NADPH OXIDASE 41 931 - -
Car01g01297 931 CDD EFh 231 278 IPR002048 GO:0005509
Car01g01297 931 Pfam Ferric reductase like transmembrane component 411 565 IPR013130 -
Car01g01297 931 SUPERFAMILY Riboflavin synthase domain-like 608 723 IPR017938 -
Car01g01297 931 Coils Coil 141 161 - -
Car01g01297 931 Gene3D - 721 931 IPR039261 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01297 Car-Chr1 17739450 17749485 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01297 32 931 Miscellaneous Gene Families AT1G19230 62.393 0.0 1149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01297 K13447 - gmx:100805697 1523.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01297 01 17739450 17749485 Car01g01297 01 17739450 17749485 ECH