Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01243 ATGAAGACAATTCTAACTATCTTCTTCATTTTTTCTCTTCTTTCCCTCTCTCACGCATCAGTAGTAGATTTTTGTGTAGCAGATTACACATTTCCAAATGGCCCCGCAGGATACTCTTGCAAAAAACCATCAAAAGTAACCGCGGATGACTTTGTTTACCACGGCTTAAGCGCAGGTGGTAACACCACAAACATTATAAAAGCCGCGGTTACACCTGCATTCGACGCGCAATTCCCAGGTGTAAATGGCCTGGGAATTTCCATTGCGCGTCTAGATTTAGCTGCAGGTGGAGTTATTCCGCTCCACACGCACCCGGGCGCTTCGGAAGTGTTGGTGGTTGTTCAAGGAAAAATTTGTGCCGGTTTTGTTTCGTCCGACAATACCGTTTACCTTAAAACACTTTATAAAGGTGATGTTATGGTTTTTCCACAAGGGTTGTTGCATTTTCAAATTAATGGTGGTGGTTCTAATGCACTTGCTTTTGTGAGCTTTAGTAGTCCTAATCCTGGTTTGCAGATTTTGGATTTTGCTTTGTTTAAAAGTGATTTTCCAACTGAGTTGATTACTGCTACTACTTTTATTGATGCTGCTGTTGTGAAGAAGCTTAAGGGTGTTCTTGGAGGTAGTGGTTAA 633 0.4186 MKTILTIFFIFSLLSLSHASVVDFCVADYTFPNGPAGYSCKKPSKVTADDFVYHGLSAGGNTTNIIKAAVTPAFDAQFPGVNGLGISIARLDLAAGGVIPLHTHPGASEVLVVVQGKICAGFVSSDNTVYLKTLYKGDVMVFPQGLLHFQINGGGSNALAFVSFSSPNPGLQILDFALFKSDFPTELITATTFIDAAVVKKLKGVLGGSG 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01243 210 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 8 206 - -
Car01g01243 210 Gene3D Jelly Rolls 18 209 IPR014710 -
Car01g01243 210 CDD cupin_OxOx 17 206 - -
Car01g01243 210 SUPERFAMILY RmlC-like cupins 21 204 IPR011051 -
Car01g01243 210 ProSitePatterns Germin family signature. 97 110 IPR019780 GO:0030145
Car01g01243 210 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 8 206 - -
Car01g01243 210 PRINTS Germin signature 102 122 IPR001929 GO:0030145
Car01g01243 210 PRINTS Germin signature 132 152 IPR001929 GO:0030145
Car01g01243 210 PRINTS Germin signature 165 180 IPR001929 GO:0030145
Car01g01243 210 Pfam Cupin 58 198 IPR006045 -
Car01g01243 210 SMART Cupin_1_3 54 200 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01243 Car-Chr1 15425854 15426908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01243 1 209 Miscellaneous Gene Families AT5G20630 69.048 4.65e-101 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01243 - - gmx:100806553 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01243 01 15425854 15426908 Car01g01243 01 15425854 15426908 ECH