Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01240 ATGGCGTCCGTTTACATTCCCGTTCAGAATTCGGAGGAAGAAGTTAGGGTTAATCTCGATCAACTTCCCAGGGATGCTTCCGACATCCTTGACATCCTCAAGGCCGAGCAAGCTCCTCTTGATCTTTGGCTCATTATCGCGAGGGAGTACTTCAAGCAGGGAAAAGTTGATCAGTTTCGCCAGATTTTGGAGGAAGGATCCAGTCCAGAAATTGATGATTATTATGCTGATATTAGATATGAGAGGATCGCTATCTTAAATGCCCTTGGGGCTTACTATAGCTACCTTGGAAAAATAGAGACAAAACAAAGAGAAAAGGAGGAGCATTTCATTTTGGCAACACAATATTACAATAAAGCATCAAGGATAGACATGCATGAGCCCTCTACTTGGGTTGGTAAAGGTCAGCTTTTACTAGCAAAGGGTGAAGTTGAACAGGCATCTGCTGCATTTAAGATTGTGTTAGATGGAGATCGTGATAATGTTCCTGCACTTTTAGGCCAGGCATGTGTTGAGTTCAACCGTGGAAGATATTCTGATTCACTTGAGTTGTATAAGAGGGCATTGCAAGTGTATCCCAATTGCCCTGCAGCTGTGAGACTTGGCATAGGACTGTGTCGCTACAAATTAGGTCAATTTGAAAAGGCGCGACAGGCATTTGAGCGTGTTTTGCAGCTTGACCCGGAAAATGTTGAGGCTCTTGTTGCACTTGCAATAATGGACTTGCGCACTAACGAAGCTGTTGGAATTAGGAAAGGAATGGTAAAAATGCAGAGGGCATTTGAGATATACCCGTACTGTGCAATGGCTCTGAATTATCTAGCAAATCATTTCTTCTTCACTGGTCAACATTTTTTGGTTGAGCAACTGACTGAAACTGCATTAGCTGTTACCAATCATGGTCCAACAAAGTCCCACTCTTATTACAATTTAGCACGCTCTTACCATAGCAAGGGGGACTATGACAAAGCTGGGGTGTATTACATGGCATCAGTCAAGGAAATTAGCAAGCCCCATGAATTTGTGTTTCCTTATTATGGTTTGGGACAAGTACAAATTAAGTTGGGAGATTTTAGAAGTGCACTCTCAAACTTTGAAAAGGTTTTGGAGGTGTACCCGGATAATTGCGAGACACTGAAAGCACTTGCGTACATATATGTTCAGCTTGGTCAGACTGACAAGGGTCAGGAGTTTATAAGGAAAGCTACAAAAATTGATCCACGTGATGCCCAGGCATTTCTTGAACTTGGAGAATTGTTAATTTTGTCCGACACAGGAGCTGCACTGGATGCATTCAAAACTGCTCGCACTCTTTTTAAGAAGGGAGGTGAGGAAGTACCAATTGAACTACTCAATAATATTGGTGTTCTTCAGTTTGAAAGGGGAGAATTTGAGCTTGCTAAACAAACTTTTAAGGAAGCTCTTGGTGATGGAATTTGGCTTTCTTTCTTTAGCGAGACAAATAAATCATCCATTGATGCTGCTACTTCTACTCTTCAATTTAAGGACATGCAATTATTTCATGACCTTGAAAGTAATGGTCACCATATTGATGTACCATGGGATAAAGTCACAGTACTCTTTAACCTGGGCAGGTTACTTGAGCAATTAAATGAATCTGGAACTGCAAGCATATTATATCGCCTAATCTTATTCAAGTACCCAGACTACATTGATGCATACCTGAGGCTAGCTGCTATTGCAAAGGCTCGGAACAACATTCTCTTAAGCATTGAACTGGTTAATGATGCCCTGAAGGTCAATGACAAGTGTCCAAATGCATTATCTATGCTTGGTGAGTTGGAGTTGAAAAACGACGACTGGGTGAAGGCAAAAGAAACTCTCCGGGCAGCTAGTGATGCCACTGATGGGAAGGACTCATATGCTACACTTTCTCTAGGAAACTGGAACTACTTTGCTGCAGTTCGCAATGAAAAGAGAAATCCAAAGCTAGAAGCTACTCATTTGGAAAAGGCCAAGGAACTTTATACAAGAGTTTTGATTCAGCATTCTGCTAATTTATATGCTGCCAATGGTGCTGCAGTTGTTTTTGCGGAAAAAGGCCATTTTGATGTTTCAAAAGATATCTTTACCCAGGTTCAAGAAGCGGCCAGCGGTAGTGTTTTTGTCCAGATGCCCGACGTTTGGATAAATCTGGCACATGTTTATTTTGCTCAGGGGAATTTTACTTTGGCCGTCAAAATGTATCAGAATTGCTTGCGGAAGTTTTATCATAACACAGACTCACAAGTACTTCTATACTTGGCTCGTACGCACTATGAAGCCGAACAGTGGCAAGACTGTATTAAAACTCTACAAAGAGCCATCCATTTGGCACCCTCGAACTACACATTAAGGTTTGATGCAGGGGTTGCAATGCAAAAGTTTTCAGCATCAACGCTTCAAAAGGCAAAGAGAACTGCAGATGAGGTGAGAGCAACGGTTGCTGGACTACAAAATGCTGTTCGTATATTTAGTCAGTTGTCTGCTGCTTCCAACCTGCATATTCATGGATTTGATGAGAAGAAGATAGACACTCATGTTGGATACTGCACCCACTTACTTTCAGCTGCAAAAGTTCATCTTGAAGCAGCTGAGCGTGAGGAACAACAAATACGGGAGAGACACGAACTTGCTCGTCAGGTTGCATTGGCTGAGGACGCCCGGCGTAAGGCTGAAGAGCAAAGGAAATTTCAGATGGAAAGGAGAAAGCAGGAGGATGAGATAAAACAAGTGCAACAACAGGAGGAACATTTTAAGCGTGTTAAGGAACAATGGAAGAGCAGCACACATTCGAAACGGAGGGAAAGGTCGGATGATGAAGATGGTGGTGGGGCTGGCGagaaaaagagaagaaaaggtggaaagaagaggaagaaggataagCACTCAAAATCACGCAATGACACAGAAGAAATGGAAGCTGATATGATGGATGAACAGGAAATGGAGGATGATGCTGACATGAACGAGCCCCAAACTCAGATGAACGATGTTGAAGAAAATCCCCACGGTCTTCTTGCAGCAGCTGGACTTGAGGATTCTGATGCTGAAGATGAGCCGGTTGGACCATCCTCAACCATTAGCAGGCGGAGGCAAGCATTATCAGAATCTGACGACGATGAACCAATAATGAGGCAATCAAGTCCTGTAAGAGAATATTCTGCTGATATGCAGGAGAGCGATGGAGAGATCAGGGATGAGGACAAGACACATGGAGATGAGGCCAGTGATGAGGAGTAA 3243 0.4237 MASVYIPVQNSEEEVRVNLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVDQFRQILEEGSSPEIDDYYADIRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDRDNVPALLGQACVEFNRGRYSDSLELYKRALQVYPNCPAAVRLGIGLCRYKLGQFEKARQAFERVLQLDPENVEALVALAIMDLRTNEAVGIRKGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEISKPHEFVFPYYGLGQVQIKLGDFRSALSNFEKVLEVYPDNCETLKALAYIYVQLGQTDKGQEFIRKATKIDPRDAQAFLELGELLILSDTGAALDAFKTARTLFKKGGEEVPIELLNNIGVLQFERGEFELAKQTFKEALGDGIWLSFFSETNKSSIDAATSTLQFKDMQLFHDLESNGHHIDVPWDKVTVLFNLGRLLEQLNESGTASILYRLILFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNDKCPNALSMLGELELKNDDWVKAKETLRAASDATDGKDSYATLSLGNWNYFAAVRNEKRNPKLEATHLEKAKELYTRVLIQHSANLYAANGAAVVFAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFTLAVKMYQNCLRKFYHNTDSQVLLYLARTHYEAEQWQDCIKTLQRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAGLQNAVRIFSQLSAASNLHIHGFDEKKIDTHVGYCTHLLSAAKVHLEAAEREEQQIRERHELARQVALAEDARRKAEEQRKFQMERRKQEDEIKQVQQQEEHFKRVKEQWKSSTHSKRRERSDDEDGGGAGEKKRRKGGKKRKKDKHSKSRNDTEEMEADMMDEQEMEDDADMNEPQTQMNDVEENPHGLLAAAGLEDSDAEDEPVGPSSTISRRRQALSESDDDEPIMRQSSPVREYSADMQESDGEIRDEDKTHGDEASDEE 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01240 1080 Coils Coil 801 821 - -
Car01g01240 1080 ProSiteProfiles TPR repeat region circular profile. 342 375 - -
Car01g01240 1080 MobiDBLite consensus disorder prediction 893 949 - -
Car01g01240 1080 ProSiteProfiles TPR repeat profile. 162 195 IPR019734 GO:0005515
Car01g01240 1080 Coils Coil 855 922 - -
Car01g01240 1080 Gene3D Tetratricopeptide repeat domain 344 506 IPR011990 GO:0005515
Car01g01240 1080 Gene3D Tetratricopeptide repeat domain 651 835 IPR011990 GO:0005515
Car01g01240 1080 Gene3D Tetratricopeptide repeat domain 507 650 IPR011990 GO:0005515
Car01g01240 1080 MobiDBLite consensus disorder prediction 1033 1047 - -
Car01g01240 1080 Pfam Tetratricopeptide repeat 718 782 - -
Car01g01240 1080 ProSiteProfiles TPR repeat region circular profile. 197 230 - -
Car01g01240 1080 ProSiteProfiles TPR repeat profile. 197 230 IPR019734 GO:0005515
Car01g01240 1080 Pfam Tetratricopeptide repeat 306 333 IPR019734 GO:0005515
Car01g01240 1080 MobiDBLite consensus disorder prediction 1057 1073 - -
Car01g01240 1080 SUPERFAMILY TPR-like 302 742 IPR011990 GO:0005515
Car01g01240 1080 ProSiteProfiles TPR repeat profile. 749 782 IPR019734 GO:0005515
Car01g01240 1080 ProSiteProfiles TPR repeat profile. 342 375 IPR019734 GO:0005515
Car01g01240 1080 MobiDBLite consensus disorder prediction 973 991 - -
Car01g01240 1080 MobiDBLite consensus disorder prediction 893 1080 - -
Car01g01240 1080 Pfam Tetratricopeptide repeat 169 228 - -
Car01g01240 1080 Gene3D Tetratricopeptide repeat domain 8 337 IPR011990 GO:0005515
Car01g01240 1080 ProSiteProfiles TPR repeat profile. 376 409 IPR019734 GO:0005515
Car01g01240 1080 ProSiteProfiles TPR repeat profile. 713 746 IPR019734 GO:0005515
Car01g01240 1080 SMART tpr_5 197 230 IPR019734 GO:0005515
Car01g01240 1080 SMART tpr_5 305 338 IPR019734 GO:0005515
Car01g01240 1080 SMART tpr_5 376 409 IPR019734 GO:0005515
Car01g01240 1080 SMART tpr_5 448 477 IPR019734 GO:0005515
Car01g01240 1080 SMART tpr_5 162 195 IPR019734 GO:0005515
Car01g01240 1080 SMART tpr_5 592 625 IPR019734 GO:0005515
Car01g01240 1080 SMART tpr_5 128 161 IPR019734 GO:0005515
Car01g01240 1080 SMART tpr_5 524 557 IPR019734 GO:0005515
Car01g01240 1080 SMART tpr_5 342 375 IPR019734 GO:0005515
Car01g01240 1080 SMART tpr_5 749 782 IPR019734 GO:0005515
Car01g01240 1080 SMART tpr_5 713 746 IPR019734 GO:0005515
Car01g01240 1080 SMART tpr_5 558 591 IPR019734 GO:0005515
Car01g01240 1080 Pfam Tetratricopeptide repeat 354 412 - -
Car01g01240 1080 PANTHER RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 1 1058 IPR031101 GO:0006355|GO:0016570
Car01g01240 1080 SUPERFAMILY TPR-like 107 296 IPR011990 GO:0005515
Car01g01240 1080 SUPERFAMILY TPR-like 654 798 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01240 178 408 EF-hand Containing Proteins AT2G32450 22.363 6.41e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01240 K15176 - gmx:100794371 1910.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01240 01 15330736 15347489 Car01g01240 01 15330736 15347489 ECH