Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01199 ATGGCGAGGCTACTTCGCAACGCCAACGCTTTTCTCCTCAATCGCTCTCTCTTCCGCCCTAACCTTCCAACGCGCTTTTGCTTAAAAAATGGAGTATTAGGCACATCTCAAGTTTTCAGCTTTTCAACTAATAAAGGTAAGAGGCGCTCTAAATCAGATGGAAGTGACTCAGGTGAAGAGAACATGTCTAAGAAAGATTTAGCCCTTCAACAAGCCATGGATCAGATCACCTCTACGTTTGGAAAGGGATCAATCATGTGGCTTGGTCGTTCGGTCTCACCTAAAAATGTACCTGTGGTGTCAACTGGTTCTTTTGCTCTTGATATAGCGCTTGGAATCTTTGGTCTTCCAAAGGGGCGTGTTGTGGAAATTTTTGGTCCAGAGGCTTCTGGGAAAACAACTCTTGCTTTGCATGTGATTGCAGAGGCACAGAAGCAAGGAGGCTACTGTGCCTTTATTGATGCTGAGCATGCACTTGATAAGTCACTTGCAGAGTCTATTGGAGTAAATACCGAGAACTTGCTTCTCTCACAGCCAGATTGTGGTGAACAGGCACTTAGCCTCGTGGATACCTTAATTCGGAGTGGTTCAATTGATGTAGTTGTCGTTGACAGCGTGGCTGCCCTTGTTCCTAAAGGCGAGCTTGATGGTGATATGGGTGATGCACACATGGCGATGCAAGCTAGGCTGATGAGCCAGGCTCTTCGGAAATTGTGCCACTCTTTGTCACTCTCACAGTGTATATTGATTTTTATAAACCAGGTAAGGTCAAAGATTTCTACTTTTGGGGGATTCGGTGGGCCTACAGAAGTTACTTGTGGTGGTAATGCATTGAAATTCTATGCTTCTGTGAGGCTAAATATCAAAAGAATAGGCTTTGTCAAGAAGGGTGAAGAGACTTTAGGAAGCCAGGTTCTTGTCAAGGTTGTAAAGAACAAACATGCCCCTCCATTTAAAACTGCACAGTTTGAGCTCGAGTTTGGCAAGGGAATAAGCAGAGAAGCAGAGGTTATAGAGTTGAGCATAAAACACAAACTCGTAAAAAAGAGTGGTTCGTTTTACGAATATAATGGCCGGAATTTCCATGGCAAGGATGCACTAAAAAACTTCCTGGCCAACAGCGGTGGCTTACAAGAATTAACAACAAAGCTTAGAGAAAAGCTTCTCAACGCTGACATTGCTGATGCGGAAACAGTTCCAGAAGCGCAGGCGATGGATGGAGATGTTATGGAAGAAACTTTATCCCCTGATTCTACTGATGAAGAAGCCGTTGCTGTTGTAGAAGCTTGA 1290 0.4426 MARLLRNANAFLLNRSLFRPNLPTRFCLKNGVLGTSQVFSFSTNKGKRRSKSDGSDSGEENMSKKDLALQQAMDQITSTFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIFGLPKGRVVEIFGPEASGKTTLALHVIAEAQKQGGYCAFIDAEHALDKSLAESIGVNTENLLLSQPDCGEQALSLVDTLIRSGSIDVVVVDSVAALVPKGELDGDMGDAHMAMQARLMSQALRKLCHSLSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEETLGSQVLVKVVKNKHAPPFKTAQFELEFGKGISREAEVIELSIKHKLVKKSGSFYEYNGRNFHGKDALKNFLANSGGLQELTTKLREKLLNADIADAETVPEAQAMDGDVMEETLSPDSTDEEAVAVVEA 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01199 429 MobiDBLite consensus disorder prediction 46 63 - -
Car01g01199 429 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 331 IPR027417 -
Car01g01199 429 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 418 - -
Car01g01199 429 Hamap Protein RecA [recA]. 65 392 IPR013765 GO:0003697|GO:0005524|GO:0006281
Car01g01199 429 SUPERFAMILY RecA protein, C-terminal domain 332 386 IPR023400 -
Car01g01199 429 MobiDBLite consensus disorder prediction 44 63 - -
Car01g01199 429 Gene3D - 95 393 IPR027417 -
Car01g01199 429 ProSitePatterns recA signature. 277 285 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Car01g01199 429 PRINTS RecA protein signature 154 183 IPR013765 GO:0003697|GO:0005524|GO:0006281
Car01g01199 429 PRINTS RecA protein signature 188 217 IPR013765 GO:0003697|GO:0005524|GO:0006281
Car01g01199 429 PRINTS RecA protein signature 226 255 IPR013765 GO:0003697|GO:0005524|GO:0006281
Car01g01199 429 PRINTS RecA protein signature 274 302 IPR013765 GO:0003697|GO:0005524|GO:0006281
Car01g01199 429 PRINTS RecA protein signature 307 336 IPR013765 GO:0003697|GO:0005524|GO:0006281
Car01g01199 429 PANTHER RECA 1 418 IPR013765 GO:0003697|GO:0005524|GO:0006281
Car01g01199 429 TIGRFAM tigrfam_recA: protein RecA 65 384 IPR013765 GO:0003697|GO:0005524|GO:0006281
Car01g01199 429 Pfam recA bacterial DNA recombination protein 68 332 IPR013765 GO:0003697|GO:0005524|GO:0006281
Car01g01199 429 ProSiteProfiles RecA family profile 1. 96 255 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Car01g01199 429 SMART AAA_5 118 292 IPR003593 -
Car01g01199 429 ProSiteProfiles RecA family profile 2. 265 336 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01199 Car-Chr1 14547081 14554325 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01199 K03553 - gmx:100798983 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01199 01 14547081 14554325 Car01g01199 01 14547081 14554325 ECH
Car07g00329 07 2967363 2979015 Car01g01199 01 14547081 14554325 PCT