Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01186 ATGGAGACTCCTCCTTCGCAACAAGGCGTGGTGAAGAAGAAGGAAACACGAGGTCGTAAACCTAAACCTAAGGAAGACAAAAAAGACGAACAACAACAATCTCATTCTAAAACTATTAAAGAATCCAAAAAGATGcaacagcaacatcaacatcaacaacaacaacaccaccaacaacagcaacaaGCTTCCGTCGACGAGAAATACACTCAATGGAAGTCTCTTGTTCCTGTTCTCTACGACTGGCTCGCTAATCATAATCTCGTCTGGCCTTCTCTCTCTTGCCGGTGGGGCCCTCAGCTTGAACAAGCTACTTACAAGAATCGCCAGCGTCTCTATCTTTCTGAGCAGACTGATGGTAGTGTCCCAAATACCTTGGTGATTGCGAATTGTGAGGTTGTGAAGACTAGGGTTGCAGCTGCAGAACATATTTCGCAGTTTAATGAAGAGGCTCGCTCTCCATTTGTGAAGAAGTACAAGACCATCATACATCCGGGCGAGGTGAACAGAATTAGGGAATTGCCACAGAATTCTAAGATAGTGGCTACTCACACAGACAGCCCTGATGTTCTCATTTGGGATGTTGAAAGCCAACCTAACCGTCATGCTGTTCTCGGAGCTACGAACTCTCGTCCAGATTTGATATTGACTGGACACCAAGATAATGCAGAATTTGCTCTTGCAATGTGCCCAACTGAGCCCTATGTGTTATCAGGAGGGAAGGATAGAACAGTGGTGTTGTGGAGTATTGAAGACCATGTAACATCTGCTGCTACGGACTCCAAGTCTGGTGGATCCATTATCAAACAAAACTCTAAATCTGGGGAAGGCGGTGAAAAAACTGTTGACAGCCCTTCTGTCGGACCAAGAGGTATCTACTCTGGGCATGAGGATACCGTTGAAGATGTTGCCTTTTGCCCTTCTAGTGCGCAGGAGTTCTGTAGTGTTGGAGATGATTCTTGTCTCATATTATGGGATGCACGTGTTGGCTCTAGTCCTGTGGTTAAGGTTGAAAAAGCTCACAATGCTGATCTTCATTGTGTTGACTGGAATCCCCATGATGATAATCTGATTCTTACTGGGTCGGCAGATAATTCAGTTCGCATGTTTGATCGCCGCAATCTCACTTCTAATGGGGTTGGTTCTCCTATCCATAAATTTGAGGCTCATAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCTGACAAATCATCTGTATTTGGAAGTTCAGCAGAAGATGGTCTGTTGAACATTTGGGATTATGAGAAGGTTGGCAAAAAGATAGAGCGAGCTGGAAAAACAATAAATTCTCCTCCAGGGTTGTTTTTCCAACATGCTGGTCATAGAGACAAAGTAGTTGACTTCCACTGGAATGCATATGATCCATGGACAATCGTTAGTGTGTCTGATGATTGTGAAAGTACTGGTGGAGGGGGAACATTGCAGATATGGCGCATGAGTGATTTGCTTTACAGACCAGAGGATGAGGTTTTGGCAGAGCTGGAGAAATTCAAATCTCATGTGGTTGCTTGTGCTGCCAAGACCGAAAAGTAA 1554 0.4311 METPPSQQGVVKKKETRGRKPKPKEDKKDEQQQSHSKTIKESKKMQQQHQHQQQQHHQQQQQASVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKTRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDRTVVLWSIEDHVTSAATDSKSGGSIIKQNSKSGEGGEKTVDSPSVGPRGIYSGHEDTVEDVAFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTSNGVGSPIHKFEAHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERAGKTINSPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLLYRPEDEVLAELEKFKSHVVACAAKTEK 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01186 517 ProSiteProfiles Trp-Asp (WD) repeats profile. 338 371 IPR001680 GO:0005515
Car01g01186 517 Pfam WD domain, G-beta repeat 214 249 IPR001680 GO:0005515
Car01g01186 517 Pfam WD domain, G-beta repeat 339 371 IPR001680 GO:0005515
Car01g01186 517 Pfam WD domain, G-beta repeat 291 326 IPR001680 GO:0005515
Car01g01186 517 Pfam WD domain, G-beta repeat 381 420 IPR001680 GO:0005515
Car01g01186 517 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 67 133 IPR022052 -
Car01g01186 517 SUPERFAMILY WD40 repeat-like 154 511 IPR036322 GO:0005515
Car01g01186 517 MobiDBLite consensus disorder prediction 258 279 - -
Car01g01186 517 MobiDBLite consensus disorder prediction 1 65 - -
Car01g01186 517 ProSiteProfiles Trp-Asp (WD) repeats profile. 387 422 IPR001680 GO:0005515
Car01g01186 517 MobiDBLite consensus disorder prediction 19 47 - -
Car01g01186 517 Gene3D - 40 503 IPR015943 GO:0005515
Car01g01186 517 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI4 40 514 - -
Car01g01186 517 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 338 371 - -
Car01g01186 517 SMART WD40_4 209 249 IPR001680 GO:0005515
Car01g01186 517 SMART WD40_4 155 194 IPR001680 GO:0005515
Car01g01186 517 SMART WD40_4 438 485 IPR001680 GO:0005515
Car01g01186 517 SMART WD40_4 286 326 IPR001680 GO:0005515
Car01g01186 517 SMART WD40_4 331 371 IPR001680 GO:0005515
Car01g01186 517 SMART WD40_4 380 420 IPR001680 GO:0005515
Car01g01186 517 MobiDBLite consensus disorder prediction 48 65 - -
Car01g01186 517 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 387 422 - -
Car01g01186 517 PANTHER WD40 REPEAT FAMILY 40 514 - -
Car01g01186 517 MobiDBLite consensus disorder prediction 258 293 - -
Car01g01186 517 ProSiteProfiles Trp-Asp (WD) repeats profile. 293 335 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01186 Car-Chr1 14197198 14204689 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01186 K10752 - gmx:100779302 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01186 01 14197198 14204689 Car01g01186 01 14197198 14204689 ECH