Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01172 ATGATCAAAGGTAAAGATGTATACAATATACTAGAAAGTATTGTGCCCCTATATGTGGCCATGATATTAGGCTATGGTTCGGTTAAATGGTGGAAAATATTCACACCGGATCAATGTGTTGGTATAAACCGTTTTGTAGCATTGTTTGCCATTCCTACCCTTACTTTTATTTTCATATCACCAATTAATCCATACCACATGAATTGGCAATTACTACTTGCGGACACACTTCAAAAAGTTGTGACTTTGGTTGTTCTTAGTCTATGGAACATTTTTACAAAACGTGGTGGTATAGATTGGAATATAACCCTTTTTTCACTTACCAATCTTCCAAATACATTAGTTGTTGGAATCCCTCTTTTGAAGGCTATGTATGGAACATTTACCACAACCCTTTTGATCCAAATTTTAGTTTTGCAAAATGTTTTGTGGTACAACTTATTGTTGTTTTTACATGAATATAGAGCGGCTAAGCTCTATATTTCACAACAATTTATTGAGACAAATAATGTTGAAGGGTCTATTATCTCCCATAAGGTTGATTCAATTAATGTTGATGTTGAAATGGGAGAAATCAATGGAAATAATAATAATCTTAATGTCAAGTCTTATTCAACATCTAGAGTGCAAAATTTTGGCGGGGTTGAAGTATATTCAAGCTACTCAAATAGTCCAAAAATTGATGGTTTTGAAGGCAAGATCTTAAAGATACAAAATCAAAGATTTTGGAGGAGCAATAGTTGCCCGGATTTGATGGTTTCTTCTTTTCAGAATCTAAAATCAACTTTTTCATGGTTTACCAATAATGGCCAAATAAAGGAAAAGTGTAGTGGTAGTTTAGGCATGCCACAAGAAGAAATGAATGCATCAAAAGTAAGTGGAGACAAAGAGCATGAGAGCAAGGATGGAATCAAAAATCAATTAACCGAGAGACCCAAGGAGTTGGAAATTAAAAAAAGAATTAGTGTCGACAATAAACAACAAATTCCACCTGGTCGTGGCATGATGACAAAGCTCATTCTCGTTAAGGTGGGGAGGACGCTCGCAAAAAATCCTAATGTTCATGCTGCAATTTTGGCTCTCGCATGGTCTCTCATATCATTTAGGTGGAACATCAAAATGCCAGCGATCATCCACGATTCTGTTACAATAATGTCTGATACTGGACTTGGAATGTCTATGTTTAGTCTAGGCGTATTCACGGCATTACAACCCAAGATCATTGCTTGCAGTAAAACTGAGTTAGCATTTTCTATGATACTTAAGTTTTTGGTTGGTCCTGTGTTGTTTGGTGCAACTTCTGCAGCTGTTGGTATTCGTGGAGTTGTTTTCAAATTCGGAATTATGCAGGCTGCTCTTCCTCACGGTATTGTTCCTTTTGTATTCGCCAGAGAGTACAATCTCCATGCCGTAATATTTAACACATCGGTTATCCTCGGAACGGCAATTGCGCTCCCTATAGCAATACTCTATTACGTGCTTCTAGACCTTAATGTTTCTTTTTAA 1506 0.3645 MIKGKDVYNILESIVPLYVAMILGYGSVKWWKIFTPDQCVGINRFVALFAIPTLTFIFISPINPYHMNWQLLLADTLQKVVTLVVLSLWNIFTKRGGIDWNITLFSLTNLPNTLVVGIPLLKAMYGTFTTTLLIQILVLQNVLWYNLLLFLHEYRAAKLYISQQFIETNNVEGSIISHKVDSINVDVEMGEINGNNNNLNVKSYSTSRVQNFGGVEVYSSYSNSPKIDGFEGKILKIQNQRFWRSNSCPDLMVSSFQNLKSTFSWFTNNGQIKEKCSGSLGMPQEEMNASKVSGDKEHESKDGIKNQLTERPKELEIKKRISVDNKQQIPPGRGMMTKLILVKVGRTLAKNPNVHAAILALAWSLISFRWNIKMPAIIHDSVTIMSDTGLGMSMFSLGVFTALQPKIIACSKTELAFSMILKFLVGPVLFGATSAAVGIRGVVFKFGIMQAALPHGIVPFVFAREYNLHAVIFNTSVILGTAIALPIAILYYVLLDLNVSF 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01172 501 MobiDBLite consensus disorder prediction 290 309 - -
Car01g01172 501 TIGRFAM 2a69: auxin efflux carrier 1 496 IPR014024 -
Car01g01172 501 Pfam Membrane transport protein 10 492 IPR004776 GO:0016021|GO:0055085
Car01g01172 501 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 283 497 IPR033526 GO:0010315|GO:0010329
Car01g01172 501 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 1 186 IPR033526 GO:0010315|GO:0010329
Car01g01172 501 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 283 497 - -
Car01g01172 501 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 186 - -
Car01g01172 501 MobiDBLite consensus disorder prediction 277 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01172 Car-Chr1 13838054 13843105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01172 1 497 Organic Solute Cotransporters AT1G23080 37.681 2.06e-134 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01172 K13947 - tcc:18589454 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g00305 07 2758011 2760958 Car01g01172 01 13838054 13843105 PCT