Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01125 ATGGCAACAGAGAGTCTAATTAGAATCTCAGAAGCTGGGGGGAAATGGCCTTCTCATATGGAAGCTTCAGCTTTTAGCACACCACCTCGTAACATGGGGACAGAGGATTTGGGTATACTGTTGAAGGGCCATAGGTTCCGTAGTAATGGAAAGGATGTGGCACCCAATCGTAGTGGCAGTGCACCTCCCAGCATGGAAGGCTCATTTCTGGCCATAGAAAACTTATTACCGCAACAGAACACACAGGATGCAAGCTTGACAACTCTGAGCAGAGCTGTGAAAAATTGTCAATCTGAGGAACAGCTAAGAGCTGATCCAGCTTATTTAGCATATTACAGTTCCAATGTCAACCTAAACCCTAGACTTCCTCCCCCACTAACTTCCTGGGAAAATCGCCATCTGGGGCATCGCATTGGTAGTTCTAGAAATAACTGGGAACTGTCTTCTGCCGATCATAGAAGTAAAAGTTCTTTACATTTACCGCAAGCGACTCTTTCAACACACAAGGAGGAGTCCGAGGATGATTCACCCCAACAGGCATATGAAAATGAATTAGTTAACACAAGTGGAATATGGCGTAGACAGGATGCAGCTTCATTAGCATCACAGCAAAAAAATGTGGTTGATTTAATTCAGGAGGATTTTCCTCGCACCATGTCACCTGTATATAATAAGTCTCTTTCTGTAAGCCATGGAATGGTGGATAAACCCATTGACTTAGAAGCCGGTTCCAGTTCTACTCACGACCTTGTTACTACAGTAGAGTCTGCTAAACATACTGCTGGTGCAGATGATATTAGGGTGTCATCAAGTGTCAATGCTCACACCCCTGTTGCAAGCTCATCAACACTTGAATCAACAGCTAGCATGAGTTTTAGTAACTTAGATGTTGCAACTGTTGCGTCTCAATTAAAGACACTCAGTGTATCTAATCTACCAAATTCAGAAAGCCTGAGTTATGAAGAAAAATTGAAGACTAGCTACCAGAACAATATGATACAACGGCAGATGTTCCCGCAACAAAGCAATCCATGTGAAGTTCCTAGCGCCAATTCGCAAAGTGTAAACCCTGCCTACACTGGCAGGGAACAGTTTCCTCATAATTCGAGCAAGTTGTCTGATGTCCAGCCACTACTACAATCATCGGGGTTTACACCTCCCCTATATGCCACAGCAGCAGCTTATATGACCTCTGTAAATCCATATTACACTAATATGCAAGCCGCAGGCATATATACTCCTCAATATGTTGGTGGATACACTTTAAATCCGACATCTATTCCTCCATATATTTCTGCATACCCTCCTCATGGTGCTTTACCATTTGTTGTTGATGGGGCTACTAGTTCTAGATATACCCCGCTAACACCAGGGGTTTCAACCGGGGGTAGTATTTCACATGGAGCTGAAATGGCACATGCAAACAAGTACCTTGGGCAATTTGGATTTCCCGTACAGCCTTCTTTTGGTGATCCTATTTACATGCAATATAATCAGCAACCTTTCGTGGAGGGATTTGGTATTTCTGGTCATTTCGATCCACTGGCACCTAGAGCAAGTGGTGCTAACCAAATAAGTCCTTATGATTCACAAAAAAGGCCCGGAACTGGTGCTTATTTGGATGATAAAAAATTACATGACCTGAGAACTGGTGCTAATATGAATTCAAAAAGAGGTGGATTATCAGTTCCTAGTTATTTTGGACATATGCCAAACACAGGCTTTGTAATGCAGTATCCAAGTTCACCACATCCTAGTCAAGTTTTGTCCGGATATCCAGATGGAAGTACTGGCCTTCCAGGAGGTAGAAATGAAATGAAACCTTCCCCGGCTTCTGGAAGAAATGGAGGCATGTTATCTGGATGGCATGGTCCAAGATCCTTTGACAGTCCTCAAGACCCCAAGATTGTAAACTTTCTTGAAGAGTTAAAATCTGGCAAAGGTCGCAGATTTGAGCTATCCGATATTATTGGACATATTGTTGAGTTTAGCGCTGATCAGCATGGAAGTCGATTTATACAACAGAAGTTGGAAAATTGTGGTGCTGAAGATAAGGCATTGGTGTTCAGAGAGGTTCTTCCACATGCTTCCAAATTAATGACTGATGTATTCGGTAACTATGTAATACAGAAGTTTTTTGAGTATGGAAACCCTGAGCAGAGGAGGGAACTTGCAGATAAACTGGCTGGTCAAATACTGCCTTTGAGTCTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATTGAGCATGAACAGAAAGCTCAGCTTGTTCGTGAGCTAGATGGAAATATTATGAGGTGTGTTCGTGATCAAAATGGGAACCATGTAATACAGAAGTGCATCGAATCTATTCCAACCAAAAAAATTGGCTTTATACTATCTGCCTTTCGTGGTCAAGTTTCTACTTTATCAATGCATCCTTATGGTTGTCGAGTCATACAGAGAATTCTAGAGCATTGTACAGACGAGGCTCAGTGTCAGTTCATCGTGGATGAAATCTTGGACTCCGTTTTTACTCTTGCTCAGGACCAGTATGGTAATTATGTTACCCAGCATGTGTTGGAAAGAGGAAAAGCTCAAGAAAGGAGCCAAATTATCAGCAAGCTGTCAGGGCATATTGTTCAATTAAGCCAGCACAAGTTTGCTTCAAATGTTGTTGAGAAATGTTTGGAGTATGGTGATGCCTCTGAACGGGAATTGTTAATTGCTGAGATTCTTGGACATGATGAGCAAAATGATAATTTATTGACAATGATGAAAGACCAATTTGCGAATTACGTGGTCCAGAAGGTTATTGATATGTGTTCAGAAAATCAGCAAGCAATGTTACTCTCTCACATAAGAGTCAATGCTCACGCTTTGAAGAAATACACTTACGGAAAACACATTGTGGCTCGTTTGGAACATCAATTTGGAGAAAATCAAACACCCAATTCATGA 2952 0.419 MATESLIRISEAGGKWPSHMEASAFSTPPRNMGTEDLGILLKGHRFRSNGKDVAPNRSGSAPPSMEGSFLAIENLLPQQNTQDASLTTLSRAVKNCQSEEQLRADPAYLAYYSSNVNLNPRLPPPLTSWENRHLGHRIGSSRNNWELSSADHRSKSSLHLPQATLSTHKEESEDDSPQQAYENELVNTSGIWRRQDAASLASQQKNVVDLIQEDFPRTMSPVYNKSLSVSHGMVDKPIDLEAGSSSTHDLVTTVESAKHTAGADDIRVSSSVNAHTPVASSSTLESTASMSFSNLDVATVASQLKTLSVSNLPNSESLSYEEKLKTSYQNNMIQRQMFPQQSNPCEVPSANSQSVNPAYTGREQFPHNSSKLSDVQPLLQSSGFTPPLYATAAAYMTSVNPYYTNMQAAGIYTPQYVGGYTLNPTSIPPYISAYPPHGALPFVVDGATSSRYTPLTPGVSTGGSISHGAEMAHANKYLGQFGFPVQPSFGDPIYMQYNQQPFVEGFGISGHFDPLAPRASGANQISPYDSQKRPGTGAYLDDKKLHDLRTGANMNSKRGGLSVPSYFGHMPNTGFVMQYPSSPHPSQVLSGYPDGSTGLPGGRNEMKPSPASGRNGGMLSGWHGPRSFDSPQDPKIVNFLEELKSGKGRRFELSDIIGHIVEFSADQHGSRFIQQKLENCGAEDKALVFREVLPHASKLMTDVFGNYVIQKFFEYGNPEQRRELADKLAGQILPLSLQMYGCRVIQKALEVIEHEQKAQLVRELDGNIMRCVRDQNGNHVIQKCIESIPTKKIGFILSAFRGQVSTLSMHPYGCRVIQRILEHCTDEAQCQFIVDEILDSVFTLAQDQYGNYVTQHVLERGKAQERSQIISKLSGHIVQLSQHKFASNVVEKCLEYGDASERELLIAEILGHDEQNDNLLTMMKDQFANYVVQKVIDMCSENQQAMLLSHIRVNAHALKKYTYGKHIVARLEHQFGENQTPNS 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01125 983 ProSiteProfiles Pumilio RNA-binding repeat profile. 836 871 IPR001313 GO:0003723
Car01g01125 983 ProSiteProfiles Pumilio RNA-binding repeat profile. 763 798 IPR001313 GO:0003723
Car01g01125 983 ProSiteProfiles Pumilio RNA-binding repeat profile. 908 949 IPR001313 GO:0003723
Car01g01125 983 ProSiteProfiles Pumilio RNA-binding repeat profile. 727 762 IPR001313 GO:0003723
Car01g01125 983 Pfam Pumilio-family RNA binding repeat 659 693 IPR001313 GO:0003723
Car01g01125 983 Pfam Pumilio-family RNA binding repeat 841 873 IPR001313 GO:0003723
Car01g01125 983 Pfam Pumilio-family RNA binding repeat 696 728 IPR001313 GO:0003723
Car01g01125 983 Pfam Pumilio-family RNA binding repeat 803 838 IPR001313 GO:0003723
Car01g01125 983 Pfam Pumilio-family RNA binding repeat 918 951 IPR001313 GO:0003723
Car01g01125 983 Pfam Pumilio-family RNA binding repeat 774 789 IPR001313 GO:0003723
Car01g01125 983 Pfam Pumilio-family RNA binding repeat 876 910 IPR001313 GO:0003723
Car01g01125 983 Pfam Pumilio-family RNA binding repeat 731 764 IPR001313 GO:0003723
Car01g01125 983 ProSiteProfiles Pumilio RNA-binding repeat profile. 799 835 IPR001313 GO:0003723
Car01g01125 983 SMART pum_5 914 949 IPR001313 GO:0003723
Car01g01125 983 SMART pum_5 727 762 IPR001313 GO:0003723
Car01g01125 983 SMART pum_5 799 835 IPR001313 GO:0003723
Car01g01125 983 SMART pum_5 655 690 IPR001313 GO:0003723
Car01g01125 983 SMART pum_5 836 871 IPR001313 GO:0003723
Car01g01125 983 SMART pum_5 691 726 IPR001313 GO:0003723
Car01g01125 983 SMART pum_5 763 798 IPR001313 GO:0003723
Car01g01125 983 SMART pum_5 872 907 IPR001313 GO:0003723
Car01g01125 983 Gene3D - 636 980 IPR011989 -
Car01g01125 983 ProSiteProfiles Pumilio RNA-binding repeat profile. 872 907 IPR001313 GO:0003723
Car01g01125 983 MobiDBLite consensus disorder prediction 518 540 - -
Car01g01125 983 ProSiteProfiles Pumilio RNA-binding repeat profile. 691 726 IPR001313 GO:0003723
Car01g01125 983 PANTHER PUMILIO HOMOLOG 5 45 976 - -
Car01g01125 983 SUPERFAMILY ARM repeat 640 972 IPR016024 -
Car01g01125 983 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 45 976 - -
Car01g01125 983 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 635 975 IPR033133 GO:0003723
Car01g01125 983 MobiDBLite consensus disorder prediction 585 630 - -
Car01g01125 983 ProSiteProfiles Pumilio RNA-binding repeat profile. 655 690 IPR001313 GO:0003723
Car01g01125 983 CDD Pumilio 650 971 IPR033712 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01125 Car-Chr1 11417548 11428893 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01125 K17943 - gmx:100811036 1639.78