Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01117 ATGGAGGGTACCCTCTTCCCCAATAGACCACTTCTTCCACTCCCAACAAAAAAATCTCCACAACAACCTTTGAAATTCAAACCAACATTTTCTCACTCTccaccaccaccacaacaatcaccaccatcacaaacaccTGTTTCATATCATTTAGATTCTCTTCTTCACCATCTCAAACACCTTTCTTCAGCACAAAAACTTGTCCCTTTAAATcaaaacaacaacaacaataataacaCCCATTTCTCTTCTCTCCAAATTCCACTTGATAACACCCACAAAACTCTTCAACACTCTCATACAAAACGACCCAATTCGGCATCTGTTGATTGTAACTGGTTTGAGGATGCAAAGTTTGGATTTTTATCTGATAAAAGTAAGTGTATGCTTAATTCAATTGTTGGATTTTCTTTGAATGATTTGATTGAGTTTTTCAACTCTGTGAAATATGAGTTACTTGAATCTGATATTACTAGTTTGTTGAAAGGTTTGGACCTTTCTGGTAATTGGGAAAGAGCTTTTTTGTTGTTTGAATGGGTTTGGTTGAATTTTGGGTCTGAAAATATGAGGGTTGATGATCAATCTGTTGAATTAATGGTTAAGATATTGGGTAGGGAATCACAATATTCAATTGCATCCAAGTTGTTTGATATAATTCCTGTTGAAGAATATTCACTTGATGTTAGGGCTTGTACCACTGTTCTTCATGCTTATGCTCGGACCGGTAAGTATAAACGCGCCATTTATATCTTTGAGAAGATGAAGGAGACTGGTCTTAATCCAAATTTGGTTACTTACAATGTTATGCTTGATGTTTACGGCAAAATGGGTCGGTCTTGGAATAAGATTTTGGGGTTGTTGAATGAGATGAGATGTAAAGGGCTTGAGTTTGATGAGTTTACTTGCAGCACTGTGATATCTGCTTGTGGAAGAGAGGGAATGCTTGATGAAGCAAGGAAGTTTTTTGCTGATTTGAAATTGAATGGATATAAACCCGGAACTGTTACGTACAATTCTATGCTGCAGGTTTTTGGGAAGGCTGGTGTTTACATTGAAGCCTTGAACATCTTAAAAGAAATGGAGGATAATAATTGCGTGCCTGATGAGGTTACTTACAATGAGCTTGTGGCAGCTTATGTAAGAGCCGGGTTTCACGACAAAGGCGCTGCTGTCATTGATACAATGGCAAGCAAAGGTGTTATGCCAAATGCTGTTACTTATACCACAGTGATAAATGCGTATGGCAAGGCAGCAGACGAGGACAAGGCGTTGAATATGTATGGTCAGATGAAGGAGTTGGGGTGTGTTCCTAATGTGTCCACATACAATGCTGTTCTTGCAATGCTAGGCAAGAGGTCGAGATCAGAAGACATGATTAAGGTTCTCTGTGACATGAAATTGACCGGATGTCCTCCTAATCGTATCACGTGGAACACGATGCTTGCTGTGTGTGGTGAGAAGGGTAAGCAAAAATATGTTAACCAGGTTTTAAGGGAAATGAAAAACTGTGGATTTGAGCCTGATAAAGACACGTTCAATACATTAATTAGTGCATATGGTCGGTGTGGATCTGAAGTTGATGTTGCGAAAATGTACGGAGAAATGGTTACAGCAGGCTTTACTCCATGCATAACGACTTATAATGCTCTTCTTAACGCTCTTGCCCGGCGAGGTGATTGGAAAGCAGCAGAATCCGTCATTCTTGACATGCGATATAAGGGCTTTAAGCCGAATGAAACTTCGTACTCGCTTTTGCTTCATTGTTATTCTAAGGCTGGGAACGTCAGGGGTTTAGAGAAGGTTGAGAAAGAAATTTATGACGGTCACATCTTTCCTAGTTGGACACTTTTGCGAACCCTTGTTCTTACAAACTATAAGTGCAGACAGCTTGAAGGAATGGAAAGGGCGTTTCATCAGTTGCAAAAGAATGGATACAAACTCGATATGGTTGTAATTAACTCCATGCTTTCGATGTTCATCCGAAACATACAGCTCGAGAAGGTGCACGAAATGATAGACCTCATTCACAAAAGTGGGTTTCAGCCGAATCTTGTGACATATAATAGCTTGATAGACTTGTATGCCCGTGTCGGTGATTGTTGGAAAGCAGAAGAAATGCTCAAGGAAATTCAAAACTCGGGTCTGAAACCAGATGTCGTGTCTTACAATACCGTCATCAAGGGATTTTGTAAAAAAGGGCTCATGCAGGAGGCTATAAGAATTCTTTCAGAGATGACTGGCTACGGAATTCAACCATGTCCGATTACATTCAATACTTTCTTGTCATGCTATGCAGGGAAAGGGCTATTTGCTGAAGCTGGTGAAGTTATTAGATACATGATTGAACATGGTTGCATGCCTAATGAACTAACTTACAAGATTGTAATTGATGGTTATTGTAAAGCTAAAAAGCATAAAGAAGCTTTAGATTTTGTGTCTAAGATTAAGGAGGTTGATATCTCTTTTGATGATCAATCTGTAAAAAGATTAGCTTCTTGCATTAAGGAGAGTTTGAGGTATTGA 2523 0.3821 MEGTLFPNRPLLPLPTKKSPQQPLKFKPTFSHSPPPPQQSPPSQTPVSYHLDSLLHHLKHLSSAQKLVPLNQNNNNNNNTHFSSLQIPLDNTHKTLQHSHTKRPNSASVDCNWFEDAKFGFLSDKSKCMLNSIVGFSLNDLIEFFNSVKYELLESDITSLLKGLDLSGNWERAFLLFEWVWLNFGSENMRVDDQSVELMVKILGRESQYSIASKLFDIIPVEEYSLDVRACTTVLHAYARTGKYKRAIYIFEKMKETGLNPNLVTYNVMLDVYGKMGRSWNKILGLLNEMRCKGLEFDEFTCSTVISACGREGMLDEARKFFADLKLNGYKPGTVTYNSMLQVFGKAGVYIEALNILKEMEDNNCVPDEVTYNELVAAYVRAGFHDKGAAVIDTMASKGVMPNAVTYTTVINAYGKAADEDKALNMYGQMKELGCVPNVSTYNAVLAMLGKRSRSEDMIKVLCDMKLTGCPPNRITWNTMLAVCGEKGKQKYVNQVLREMKNCGFEPDKDTFNTLISAYGRCGSEVDVAKMYGEMVTAGFTPCITTYNALLNALARRGDWKAAESVILDMRYKGFKPNETSYSLLLHCYSKAGNVRGLEKVEKEIYDGHIFPSWTLLRTLVLTNYKCRQLEGMERAFHQLQKNGYKLDMVVINSMLSMFIRNIQLEKVHEMIDLIHKSGFQPNLVTYNSLIDLYARVGDCWKAEEMLKEIQNSGLKPDVVSYNTVIKGFCKKGLMQEAIRILSEMTGYGIQPCPITFNTFLSCYAGKGLFAEAGEVIRYMIEHGCMPNELTYKIVIDGYCKAKKHKEALDFVSKIKEVDISFDDQSVKRLASCIKESLRY 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01117 840 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 718 752 IPR002885 -
Car01g01117 840 MobiDBLite consensus disorder prediction 29 43 - -
Car01g01117 840 TIGRFAM PPR: pentatricopeptide repeat domain 755 789 IPR002885 -
Car01g01117 840 TIGRFAM PPR: pentatricopeptide repeat domain 405 439 IPR002885 -
Car01g01117 840 TIGRFAM PPR: pentatricopeptide repeat domain 264 298 IPR002885 -
Car01g01117 840 TIGRFAM PPR: pentatricopeptide repeat domain 511 542 IPR002885 -
Car01g01117 840 TIGRFAM PPR: pentatricopeptide repeat domain 300 333 IPR002885 -
Car01g01117 840 TIGRFAM PPR: pentatricopeptide repeat domain 546 579 IPR002885 -
Car01g01117 840 TIGRFAM PPR: pentatricopeptide repeat domain 720 752 IPR002885 -
Car01g01117 840 TIGRFAM PPR: pentatricopeptide repeat domain 791 823 IPR002885 -
Car01g01117 840 TIGRFAM PPR: pentatricopeptide repeat domain 230 262 IPR002885 -
Car01g01117 840 TIGRFAM PPR: pentatricopeptide repeat domain 475 508 IPR002885 -
Car01g01117 840 TIGRFAM PPR: pentatricopeptide repeat domain 650 683 IPR002885 -
Car01g01117 840 TIGRFAM PPR: pentatricopeptide repeat domain 335 369 IPR002885 -
Car01g01117 840 TIGRFAM PPR: pentatricopeptide repeat domain 685 719 IPR002885 -
Car01g01117 840 TIGRFAM PPR: pentatricopeptide repeat domain 441 473 IPR002885 -
Car01g01117 840 TIGRFAM PPR: pentatricopeptide repeat domain 370 404 IPR002885 -
Car01g01117 840 MobiDBLite consensus disorder prediction 1 48 - -
Car01g01117 840 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Car01g01117 840 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 753 787 IPR002885 -
Car01g01117 840 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Car01g01117 840 Gene3D Tetratricopeptide repeat domain 137 279 IPR011990 GO:0005515
Car01g01117 840 Gene3D Tetratricopeptide repeat domain 280 383 IPR011990 GO:0005515
Car01g01117 840 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 648 682 IPR002885 -
Car01g01117 840 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 543 577 IPR002885 -
Car01g01117 840 Gene3D Tetratricopeptide repeat domain 384 502 IPR011990 GO:0005515
Car01g01117 840 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 297 IPR002885 -
Car01g01117 840 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Car01g01117 840 PANTHER - 1 836 - -
Car01g01117 840 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Car01g01117 840 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Car01g01117 840 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 788 822 IPR002885 -
Car01g01117 840 Pfam Pentatricopeptide repeat domain 461 520 IPR002885 -
Car01g01117 840 Pfam Pentatricopeptide repeat domain 637 694 IPR002885 -
Car01g01117 840 Pfam Pentatricopeptide repeat domain 391 452 IPR002885 -
Car01g01117 840 Pfam Pentatricopeptide repeat domain 226 276 IPR002885 -
Car01g01117 840 Pfam PPR repeat 300 329 IPR002885 -
Car01g01117 840 Pfam PPR repeat family 332 379 IPR002885 -
Car01g01117 840 Pfam PPR repeat family 542 590 IPR002885 -
Car01g01117 840 Pfam PPR repeat family 753 801 IPR002885 -
Car01g01117 840 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Car01g01117 840 Pfam PPR repeat 714 746 IPR002885 -
Car01g01117 840 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Car01g01117 840 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Car01g01117 840 Gene3D Tetratricopeptide repeat domain 619 746 IPR011990 GO:0005515
Car01g01117 840 Gene3D Tetratricopeptide repeat domain 747 822 IPR011990 GO:0005515
Car01g01117 840 Gene3D Tetratricopeptide repeat domain 503 607 IPR011990 GO:0005515
Car01g01117 840 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 683 717 IPR002885 -
Car01g01117 840 PANTHER OS03G0856100 PROTEIN 1 836 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01117 Car-Chr1 11212349 11215329 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01117 334 817 Glycosyltransferase AT1G05670 24.587 4.45e-49 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01117 K17710 - gmx:100803889 1224.15