Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01116 ATGAACAGATTGAGGTTGACACCTATATATGGAGAAGATGATGAGATAACTCATGTGATTGGAATCCAGTTATTCACAGAGGCAAACATTGATCTTGGTCCAGTTCCTGGTTCTACAATTAAGGAATCTGTTAAATCATCTGATCGGTTTCATTCAGTGCTTTCCTCATTGCACCCTCTTCCAATGGGGGACCGAAATGTGACTCGTGGAATTTGTGGGATTTTTCAATTGAGTGACGAGGTATTGTCTCTCAAAATACTGGCTCGCTTAACTCCAAGAGACATTGCATCGGTTAGTTCTGTTTGTAGGCGATTGTATGAGATAGCAAGAAATGAAGATCTTTGGAGAATGGTATGCCAAAATGCATGGGGTAGTGAAACTACTCGTGTTTTGGAGACTGTTCCTGGTGCAAGGAGACTTGGATGGGGTCGCCTAGCGAGGGAACTAACCACTCTTGAAGCAGCAGCATGGAGGAAACTGACTGTTGGAGGTACTGTTGAACCCTCACGCTGTAACTTCAGTGCTTGTGCAGTTGGAAACAGAGTTGTCCTATTTGGTGGTGAAGGGGTTAATATGCAACCCATGAATGATACCTTTGTATTGGATCTCAATTCTAATAATCCCGAGTGGCAACATGTCCAAGTTAGCTCTCCTCCCCCTGGTCGGTGGGGCCACACACTTTCTTGTGTAAATGGTTCTCGTTTGGTTGTATTTGGAGGCTGTGGAACACAGGGCTTACTCAATGATGTGTTTGTTCTGGACTTGGATGCAAACCCTCCGACTTGGCGTGAAATTTCTGGGTTGGCGCCTCCACTTCCAAGATCATGGCATAGCTCCTGTACTCTTGATGGTACTAAGTTGATAGTTTCTGGTGGCTGTGCTGACTCTGGAGTACTTTTGAGTGACACTTTCCTCCTTGATATGTCAATGGAAAACCCTGTCTGGAGGGAGATACCAGTGACATGGACACCGCCTTCCCGTCTGGGCCACACACTATCTGTTTATGGTGGTAGGAAAATTCTTATGTTTGGGGGTCTGGCCAAGAGTGGGCCGCTGCGTTTCCGGTCCAGTGATGTGTTCACGATGGATTTAAGTGAGGATGAACCTTGCTGGAGATGTGTAACGGGTAGTGGAATGCCTGGTGCTGGCAATCCTGGTGGCATAGCTCCTCCTCCTAGACTTGATCATGTGGCGGTTAGCCTTCCTGGTGGTAGAATTTTGATTTTCGGTGGGTCTGTTGCAGGCCTTCATTCTGCCTCCCAGCTTTACATACTTGATCCAACCGATGAGAAGCCTACATGGAGAATCCTAAATGTACCTGGACGCCCTCCGAGATTTGCCTGGGGACATAGTACATGTGTTGTTGGGGGGACAAGAGCTATTGTTCTGGGTGGTCAAACTGGGGAGGAATGGATGCTTAGCGACATGCATGAACTTTCCTTGGCAAGCTCTGTCATCTAG 1461 0.4709 MNRLRLTPIYGEDDEITHVIGIQLFTEANIDLGPVPGSTIKESVKSSDRFHSVLSSLHPLPMGDRNVTRGICGIFQLSDEVLSLKILARLTPRDIASVSSVCRRLYEIARNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGTVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSNNPEWQHVQVSSPPPGRWGHTLSCVNGSRLVVFGGCGTQGLLNDVFVLDLDANPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDMSMENPVWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEDEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSDMHELSLASSVI 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01116 486 SMART fbox_2 77 118 IPR001810 GO:0005515
Car01g01116 486 Pfam Galactose oxidase, central domain 170 220 - -
Car01g01116 486 Pfam Kelch motif 327 378 IPR011498 GO:0005515
Car01g01116 486 Pfam Kelch motif 394 441 IPR011498 GO:0005515
Car01g01116 486 Pfam F-box-like 82 120 IPR001810 GO:0005515
Car01g01116 486 SUPERFAMILY Kelch motif 156 380 IPR015915 GO:0005515
Car01g01116 486 ProSiteProfiles F-box domain profile. 85 118 IPR001810 GO:0005515
Car01g01116 486 Gene3D - 148 300 IPR015915 GO:0005515
Car01g01116 486 SUPERFAMILY F-box domain 63 136 IPR036047 GO:0005515
Car01g01116 486 Gene3D - 301 485 IPR015915 GO:0005515
Car01g01116 486 Gene3D - 72 118 - -
Car01g01116 486 Pfam Galactose oxidase, central domain 232 281 - -
Car01g01116 486 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 485 - -
Car01g01116 486 PANTHER ADAGIO PROTEIN 1-LIKE 1 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01116 Car-Chr1 11191780 11201972 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01116 188 465 Acyl Lipid Metabolism Gene Families AT3G05420 25.000 5.03e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01116 K12115 - gmx:100802828 929.472