Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01100 ATGGCAGCATCATTGGCATGCCTGGTTGGGAGTGGTTTATCTACACAGAGTAATAAAATAACTTTTGGCAAGGACGTAAATGGAAGACAAGTAGTATTTTCTCAGAGACATTCATCATTGAGGAGGGCATCCAAATCTATAGTTGTAAAGGCATCCTTTGATAAATGGAAACATGAAGGGAGAAGAGGATTTCTGAAATTGTTTGGCTTACCCGCATTATTAGGAAGTGGGAAAGCTTATGCTGACGAACAAGGGGTTTCCTCCTCCAAAATGTCGTATTCGAAGTTTCTCGAGTATTTGGACAAGGGTAGGGTTAAAAAAGTTGATCTGTTTGAGAATGGAACTATAGCAATTGTAGAGGCTGTTTCTCCTGAGTTGGGTAATAAGGTGCAGAGAGTGCGAGTTCAACTTCCTGGACTTAGCCAAGAACTCCTTCAGAAATTCAGGCAAAAGAACACTGACTTTTCAGCTCATAATGCTCAAGAGGAGTCGGATTCCCTTTTTTCGAACCTGATTGGAAATCTGGCTCTACCTCTAATTGTGATTGGCGGATTGTTCCTTCTCTCACGTCGCTCATCTGGAGGGACGGGAGGTCCCGGTGGGTCTGGTTTTCCTTTTGCTTTTGGTCAATCGAAAGCCAAATTTCAAATGGAACCAAACACTGGAGTAACATTTGATGATGTTGCTGGGGTGGATGAAGCCAAACAAGATTTTATGGAGGTAGTGGAGTTTCTTAAAAAGCCTGAGAGGTTCACTGCTATTGGTGCTCGCATTCCAAAAGGAGTTCTTCTCGTAGGTCCACCGGGGACTGGGAAGACGTTATTAGCCAAGGCTATTGCTGGTGAAGCAGGCGTTCCATTTTTCTCAATCTCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTTGGTGCTTCTCGAGTTCGAGATTTATTCAAGAAGGCAAAAGAGAATGCTCCTTGTATTGTTTTTGTTGATGAAATCGATGCTGTAGGAAGGCAACGAGGCACTGGAATTGGTGGAGGGAATGATGAAAGGGAACAGACCCTCAACCAACTTTTGACAGAAATGGATGGATTTGAGGGTAATACCGGAATCATTGTCATTGCAGCAACCAACAGGGCTGACATTCTCGACTCTGCTTTATTGAGACCTGGACGGTTTGATAGACAGGTAACAGTTGATGTTCCGGACATTCGGGGAAGGACTGAAATACTAAAGGTTCATGGTAGCAATAAAAAGTTTGATGCTGACGTTTCTCTTGAGGTAATTGCAATGAGAACACCTGGCTTTAGTGGAGCTGATCTTGCAAACCTCTTGAATGAAGCTGCTATATTAGCTGGTCGGCGTGGAAAGACGGAAATTTCATCAAAAGAAATTGATGATTCTATCGATAGGATTGTGGCTGGAATGGAAGGAACAGTGATGACAGATGGGAAGAGCAAAAATTTAGTGGCATATCATGAAGTTGGGCATGCCATATGTGGAACTTTGACTCCTGGCCATGATCCTGTACAAAAGGTAACCCTTGTTCCACGTGGGCAAGCTCGGGGTCTTACTTGGTTCATTCCTTCTGATGACCCAACTCTAATCTCCAAACAACAACTCTTTGCGAGAATTGTTGGTGGACTCGGTGGCAGAGCAGCAGAGGAAATTATTTTCGGTGAGCCTGAAGTTACAACTGGAGCAGCTGGTGATTTGCAGCAAACAACCAGTTTGGCTAAACAGATGGTAACCGCATTTGGAATGTCTGATATTGGTCCTTGGTCCCTTATGGACGTATCAGCTCAAAACACAGATGTTATCCTGAGAATGATGGCAAGAAACTCAATGTCAGAAAAGCTTGCCGAAGACATTGATGCTGCTATCAAGAGGATCTCAGATGAAGCATATGAAATTGCATTGAAGCATATCAGGAACAACCGTGAGGCCATTGATAAGATTGTCGAAGTTCTACTGGAGAAAGAGACGATTACCGGAGACGAATTCAGAGCTCTCCTATCGGAGTTTGTTGAAATTCCACCCGAAAATGTGGTACCTTCTTCAACTCCCTCACCGGTTGCTGCTTGA 2067 0.4373 MAASLACLVGSGLSTQSNKITFGKDVNGRQVVFSQRHSSLRRASKSIVVKASFDKWKHEGRRGFLKLFGLPALLGSGKAYADEQGVSSSKMSYSKFLEYLDKGRVKKVDLFENGTIAIVEAVSPELGNKVQRVRVQLPGLSQELLQKFRQKNTDFSAHNAQEESDSLFSNLIGNLALPLIVIGGLFLLSRRSSGGTGGPGGSGFPFAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTEISSKEIDDSIDRIVAGMEGTVMTDGKSKNLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQTTSLAKQMVTAFGMSDIGPWSLMDVSAQNTDVILRMMARNSMSEKLAEDIDAAIKRISDEAYEIALKHIRNNREAIDKIVEVLLEKETITGDEFRALLSEFVEIPPENVVPSSTPSPVAA 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01100 688 Gene3D - 85 168 - -
Car01g01100 688 SUPERFAMILY FtsH protease domain-like 477 676 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Car01g01100 688 PANTHER METALLOPROTEASE M41 FTSH 4 678 - -
Car01g01100 688 Gene3D - 213 395 IPR027417 -
Car01g01100 688 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 173 666 IPR005936 GO:0004176|GO:0004222|GO:0016020
Car01g01100 688 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 2, CHLOROPLASTIC 4 678 - -
Car01g01100 688 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 29 676 IPR005936 GO:0004176|GO:0004222|GO:0016020
Car01g01100 688 Pfam Peptidase family M41 476 664 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Car01g01100 688 CDD AAA 237 394 - -
Car01g01100 688 Pfam ATPase family associated with various cellular activities (AAA) 262 393 IPR003959 GO:0005524|GO:0016887
Car01g01100 688 ProSitePatterns AAA-protein family signature. 365 383 IPR003960 GO:0005524|GO:0016887
Car01g01100 688 Gene3D Peptidase M41 475 671 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Car01g01100 688 SMART AAA_5 258 397 IPR003593 -
Car01g01100 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 465 IPR027417 -
Car01g01100 688 Pfam AAA+ lid domain 417 460 IPR041569 -
Car01g01100 688 Gene3D - 396 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01100 Car-Chr1 10904654 10909875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01100 216 666 Miscellaneous Gene Families AT5G53170 50.220 7.82e-139 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01100 K03798 - gmx:100795567 1137.09