Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01084 ATGACAAGAAAATCTATTGTATGTTCCTTTCTTCTTGGGGTATCTTGTTTCATTGTAATTGGTGTTTATGGTGAGAATATGCTTTCTAGGACAATTTCTAAGGGAAACTATCATGATGCAATACGTGGATTGCATTCATTTAAGACATCTTTAACAAGACATGACTCCATTGCTTCAACAACTTCATCATCCTTCTCACCTTCTCCTTCTTCTCAGCCAACTGAGGGTATGAACAATCCAAAAGAATACCATGTGACATCTTATGGTGCAGACCCAACAGGGACTTCAGATAGCACAGATGCAATACTTGCAGCCATAGCAGATGCAGCAAATGGTCTAAGTGAAGAACATTTGATGGAAGGCATAAGAAACCTTGGAGGTGCACAGATCAATCTTGAAGGTGGAAATTACTTGATCAGCAGGTCAATCAAGTTGCCGGAAGCCGGTGTTGGAAACCTCATGATACATGGTGGAACAATAAAAGCCTCAGATAATTTTCCTGAAGAAGGGTACATTATTGATTTATCACCCTCATCAAATTCATCTTCATCATCCTACAATTTTGAGTACATAACTCTGAAAGACCTGTTATTGGATTCAAAGTATAGAGGAGGAGGAATTTCAGTAATAAATTCAGTTAGAACAAACATAGAGAATTGTTACATTACACATTTCACAACAAATGGAATATTAGTAAAAAGTGGACATGAAACATACATCAGAAACTCATTCATTGGTCAGCATATTACAGCCGGCGGCGATCAACAAGAAAGAAACTTCACAGGCATAGGAATAAACCTTCAAGGTAATGATAATGCTGTCACAGATGTTGTGATTTTCTCTGCTGATATTGGAATCTTGGTTACTGGTCAAGCCAACACATTTTCTGGTATACATTGTTACAATAAAGCCACTGGTTTTGGTGGCACTGGAATTTATTTGCAACTTCCTGGTTTAACTCAAACAAGGATTGTGAATTCTTATATGGATTACACAAGCATTGTTGCTGAAGATCCTGTTCAACTTCATATTTCAAGTACCTTCTTCCTTGGTGATGCTAATATTGTCTTCAAATCTATCCATGGTGTTGTTAACGGTGTTACTATTGTTGATAACATGTTCTCTGGTTCAAATCAAGGTGTTGAAATTGTTCATTTGGATGAATCAAATAACAGTAATTTTCATGAAATAGATCAAGTTGTTGTTGATAGGAACATTGTAAGGGGAATGAAATTAAAGGCTACAGTTGCAAAaatgagtatggaagggaatggaagtttatggaatgTTGATTTTAATAACATTCTTATATTTCCTAATCTTATTAAAAATGTTCAGTACTCATTAAGTTCTGTAGGAACTACTTTTCCTAATCATGCTTTGAGGAATGTTTCGGATAATAAAGTTGTGATTCAAACCAATGAAGCTGTTGTTGCTAATGTTTTTGTCACGGTGGATCAAAGCGGGGTGAGTTGA 1476 0.3523 MTRKSIVCSFLLGVSCFIVIGVYGENMLSRTISKGNYHDAIRGLHSFKTSLTRHDSIASTTSSSFSPSPSSQPTEGMNNPKEYHVTSYGADPTGTSDSTDAILAAIADAANGLSEEHLMEGIRNLGGAQINLEGGNYLISRSIKLPEAGVGNLMIHGGTIKASDNFPEEGYIIDLSPSSNSSSSSYNFEYITLKDLLLDSKYRGGGISVINSVRTNIENCYITHFTTNGILVKSGHETYIRNSFIGQHITAGGDQQERNFTGIGINLQGNDNAVTDVVIFSADIGILVTGQANTFSGIHCYNKATGFGGTGIYLQLPGLTQTRIVNSYMDYTSIVAEDPVQLHISSTFFLGDANIVFKSIHGVVNGVTIVDNMFSGSNQGVEIVHLDESNNSNFHEIDQVVVDRNIVRGMKLKATVAKMSMEGNGSLWNVDFNNILIFPNLIKNVQYSLSSVGTTFPNHALRNVSDNKVVIQTNEAVVANVFVTVDQSGVS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01084 491 PANTHER POLYGALACTURONASE QRT3-LIKE PROTEIN 1 489 - -
Car01g01084 491 Gene3D - 83 491 IPR012334 -
Car01g01084 491 MobiDBLite consensus disorder prediction 58 91 - -
Car01g01084 491 PANTHER POLYGALACTURONASE QRT3 1 489 IPR039279 GO:0004650
Car01g01084 491 SMART pbh1 364 385 IPR006626 -
Car01g01084 491 SMART pbh1 212 234 IPR006626 -
Car01g01084 491 SMART pbh1 269 290 IPR006626 -
Car01g01084 491 MobiDBLite consensus disorder prediction 58 81 - -
Car01g01084 491 Pfam Pectate lyase superfamily protein 85 306 IPR024535 -
Car01g01084 491 SUPERFAMILY Pectin lyase-like 81 465 IPR011050 -
Car01g01084 491 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01084 Car-Chr1 10743968 10746499 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01084 - - gmx:100804107 745.732