Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01073 ATGCAACACCTTCTCCTTAATATTATTCTTTCATCTACCTTCTTCTTCACTGCAAAATACAACTATTCAATGAAACCCTGCATGCTTTTTCTCTCTGTCTTATTATTTCTTCTAACCTATGTTGAGGGTCGTTTTGTGGTGGAAAAAAACAGTATCTCCATTCTGTCACCACATAAGTTAAGAGGTAAACATGATGGTGCCATAGGAAACTTTGGTCTTCCAAATTATGGAGGATATATTGTAGGCTCACTTGTTTATCCTGACAAAGGTTCTTATGGATGTCAAGTTTTTGAAGGTGATAAGCCTTTCAAGTTTCGCTCTAATCGTCCTACTATTCTTCTTCTTGATCGTGGAGAGTGTTATTTTGCCTTAAAAGTATGGCATGCACAACTAGCAGGAGCTGCAGCAGTTTTAGTAGCTGACAGCATCGATGAATCTCTTATAACAATGGATTCTCCGGAAGAGAGCACAGATGCAGATGGCTACATCGAAAAGATTGTAATTCCATCAGCACTAGTAGAGAAATCCTTTGGCGATTCGTTGAAAGAAGCTTTAAATAACAAAGACGAAGTTTTGCTACGAATAGATTGGAGGGAATCAGTACCTCATCCTGATAATCGAGTCGAGTACGAGTTCTGGACTAATAGCAATGACGAATGTGGTGCTCGGTGCGATGAACAGATGAATTTTGTGAAGAATTTTAAAGGTCATGCTCAGATTCTTGAGAGAGGTGGATACACACTGTTCACTCCACATTATATAACATGGTTTTGTCCGAAGCCTTTTGTTGAAAGTAGTCAGTGTAAGTCTCAGTGTATTAACCGCGGAAGATATTGTGCGCCGGATCCAGAGAAAGATTTTGGAGAGGGGTATGAAGGGAAGGATGTTGTGTATGAGAATTTGAGGCAGTTATGTGTTCATAGAGTAGCTAATGAGAGTAACCGTTCATGGGTGTGGTGGGATTATGTGACAGATTTTCATGTTAGATGTTCTATGAAGGAGAAGAAATATAGCAAAGATTGTGCTGAAGTTGTCATGAAATCATTAGATCTTCCTATTGAGAAAATTAAGAAATGTGTTGGTGATCCTGAAGCGGATGTGGAGAATGAAGTTCTAAAGATTGAACAAACAGCACAGATTGGAGGAGGATCTCGCGGCGATGTCACCATTTTGCCAACATTGGTTCTAAACAATGTCCAGTATAGAGGAAAATTGGAGAGAACATCTGTATTGAAGGCGGTATGTGCGGGATTTAAGGAGACTACTGAACCTCAAGTTTGTTTAAGTGGAGATATTGAAACTAATGAATGTCTTGAAAGAAATGGAGGATGCTGGCATGATAGAAATGCTAATGTAACTGCTTGCAAGGATACTTTCAGGGGAAGAGTTTGTGAGTGCCCTGTTGTGAAAGGTGTTCAGTATAGAGGAGATGGCTATATAACATGTGAAGCTTTTGGACCTGCAAGGTGTTCTTTAAACAATGGAGGTTGTTGGTCAGAAACTAGAAATAAAATTACTTTCTCGGCTTGCTCAGAATCCGAGTTAAATGGCTGTCACTGTCCAGTTGGATTTCTTGGAGATGGCAATAAATGTGAAGATGTTGATGAATGTAAGGAAAGAAGTGCATGTCAATGTGATGGATGCAGCTGTAAGAATACTTGGGGTAGTTATGATTGTAAGTGCAAAGGAGATCTTCTATATATCAAGGAACAAGATACTTGTATTGAAAGAAGTGGATCAAAATATGGAAGGGTCCTTGCCTTTGTGGTCGTAGCAGTTGTTGTGGGGGCTGCTCTAGCTGGTTACATTTTCTACAAATATAGACTCAGGTCTTACATGGACTCAGAGATCATGGCTATCATGTCACAATACATGCCACTAGACCAGCAAAACAATGTGGTGCATGCTGAATCTCAGCCTTTACGACAAGACACGGTGTAA 1941 0.3982 MQHLLLNIILSSTFFFTAKYNYSMKPCMLFLSVLLFLLTYVEGRFVVEKNSISILSPHKLRGKHDGAIGNFGLPNYGGYIVGSLVYPDKGSYGCQVFEGDKPFKFRSNRPTILLLDRGECYFALKVWHAQLAGAAAVLVADSIDESLITMDSPEESTDADGYIEKIVIPSALVEKSFGDSLKEALNNKDEVLLRIDWRESVPHPDNRVEYEFWTNSNDECGARCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWFCPKPFVESSQCKSQCINRGRYCAPDPEKDFGEGYEGKDVVYENLRQLCVHRVANESNRSWVWWDYVTDFHVRCSMKEKKYSKDCAEVVMKSLDLPIEKIKKCVGDPEADVENEVLKIEQTAQIGGGSRGDVTILPTLVLNNVQYRGKLERTSVLKAVCAGFKETTEPQVCLSGDIETNECLERNGGCWHDRNANVTACKDTFRGRVCECPVVKGVQYRGDGYITCEAFGPARCSLNNGGCWSETRNKITFSACSESELNGCHCPVGFLGDGNKCEDVDECKERSACQCDGCSCKNTWGSYDCKCKGDLLYIKEQDTCIERSGSKYGRVLAFVVVAVVVGAALAGYIFYKYRLRSYMDSEIMAIMSQYMPLDQQNNVVHAESQPLRQDTV 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01073 646 Gene3D - 42 204 - -
Car01g01073 646 SUPERFAMILY PA domain 77 191 IPR046450 -
Car01g01073 646 Gene3D Laminin 488 568 - -
Car01g01073 646 SMART egfca_6 533 575 IPR001881 GO:0005509
Car01g01073 646 CDD EGF_CA 533 562 - -
Car01g01073 646 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 34 623 - -
Car01g01073 646 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN-CONTAINING PROTEIN-RELATED 34 623 - -
Car01g01073 646 ProSitePatterns Calcium-binding EGF-like domain signature. 533 559 IPR018097 GO:0005509
Car01g01073 646 Gene3D Laminin 427 478 - -
Car01g01073 646 Pfam PA domain 82 181 IPR003137 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01073 Car-Chr1 10551116 10556400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01073 29 639 Miscellaneous Gene Families AT1G30900 71.615 0.0 959
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01073 - - pvu:PHAVU_009G243800g 1142.1