Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01004 ATGGAACCTTACACTTCGTATTATTCCTCATTGGAAATTCTCACACAACTTGTTAACACTAAATTTTCATCTAACCACCATCTTTTTGTAATGCTTTTGTTTGCAAGTTTAGCAACTTTTTACTTTGCATGTAAAAGAAAAGTACACATTTATTTGATAGATTTTAACTGCTATTGTCCTCCAAGTTCTTATAGACTACCAAAAGCCATGTTTGAAGAAAACAATTTTTTTGATCAAATGGAACAAGAAGCTGTTGATTTCCAAAGAAAGATCAGTGCAAAATCTGGATTCAGTGATGAAACATCAATTCCTCCATCACTTGCTCAAATACCCAAAATTAAAGCTCTCACCTTTGCACTTGAAGAAGCTGAAACAATCATGTATTCAACAATTGAAGACCTTTTACAAAAAACAAAAATCAACCCAAAATCCATTGACATATTAATAACTAATAGTAGCATCTTTTGTCCTACCCCATCACTTAGTTCTATGGTGATTAACAAGTTTAAGATGAGAAGCAACATTATGAGCTTCCATTTATCAGGTATGGGATGCAGTGCTGGAATTATAGCTGTTGGTCTTGCAAAAGACTTGTTGAGAGTTCATAGGAACTCATTGGCTTTAATAGTAAGCACTGAAACACTTAGTTTGAATTGGTACACAGGTAAAGTTCCATCTATGCTACTTACTAATTGTTTATTCAGAATGGGAGGATCTGCTATATTGATGTCTAGCAGAGTCCATGATAAGCATAAGGCAAAGTATGAGCTACAACATGTTGTTAGAACAATCAATGCATATGATGATCAATCGTATGCGTGTGTGTACCAGGATGTGGATGCGGAGAACAAAGAAGGTGTATTGATATCGAAGAGTATAGTCAATGTTTGTGGTGAGGTACTGAAGAAAAATATTTTTTCATTGGGACCATTGGTTTTGCCATGGAGGGAGCAATTTTTGTATGTTATTTCAATTATTTGTTACAAAGTATGGAGTAGAAGAATGAGTTTATATACTCCGAAATTTAATAGGGCTTTTGAGCATTTCTGCATACATACAGGGGGGAGAGCTGTTATACAAGCCATTGAAAGAAACTTAAGGCTAAGGAAACAGGATGTGGAACCGTCGAAAATGACTCTTTACAGATTTGGAAACACTTCATCTTCTTCAACTTGGTATGTGTTATCTTATATTGAAGCAAAAGGGAGGATGAAATGTGGAGATAGAGTTTGGCAAATTGCATTTGGAAGTGGATTCAAGTGTAACAGTGCAGTGTGGAAATGTCTAGGCGATGTGAAGCCTGATACTACCACTGCATGGAGGGACACAATTCACTCATACCCAGTAGATATTTTGGGAACAAACTGA 1368 0.3575 MEPYTSYYSSLEILTQLVNTKFSSNHHLFVMLLFASLATFYFACKRKVHIYLIDFNCYCPPSSYRLPKAMFEENNFFDQMEQEAVDFQRKISAKSGFSDETSIPPSLAQIPKIKALTFALEEAETIMYSTIEDLLQKTKINPKSIDILITNSSIFCPTPSLSSMVINKFKMRSNIMSFHLSGMGCSAGIIAVGLAKDLLRVHRNSLALIVSTETLSLNWYTGKVPSMLLTNCLFRMGGSAILMSSRVHDKHKAKYELQHVVRTINAYDDQSYACVYQDVDAENKEGVLISKSIVNVCGEVLKKNIFSLGPLVLPWREQFLYVISIICYKVWSRRMSLYTPKFNRAFEHFCIHTGGRAVIQAIERNLRLRKQDVEPSKMTLYRFGNTSSSSTWYVLSYIEAKGRMKCGDRVWQIAFGSGFKCNSAVWKCLGDVKPDTTTAWRDTIHSYPVDILGTN 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01004 455 CDD CHS_like 31 426 - -
Car01g01004 455 PIRSF Very_long_ch_3-ktacl-CoA_syn 4 455 IPR012392 GO:0006633|GO:0016020|GO:0016747
Car01g01004 455 Gene3D - 63 427 IPR016039 GO:0016746
Car01g01004 455 PANTHER 3-KETOACYL-COA SYNTHASE 16 452 IPR012392 GO:0006633|GO:0016020|GO:0016747
Car01g01004 455 PANTHER 3-KETOACYL-COA SYNTHASE 21-RELATED 16 452 - -
Car01g01004 455 SUPERFAMILY Thiolase-like 38 246 IPR016039 GO:0016746
Car01g01004 455 SUPERFAMILY Thiolase-like 257 428 IPR016039 GO:0016746
Car01g01004 455 Pfam FAE1/Type III polyketide synthase-like protein 44 329 IPR013601 GO:0006633|GO:0016020|GO:0016747
Car01g01004 455 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 346 427 IPR013747 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01004 Car-Chr1 9514740 9516295 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01004 17 449 Acyl Lipid Metabolism Gene Families AT1G71160 52.414 1.10e-167 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01004 K15397 - gmx:100783404 716.457