Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00981 ATGGCATCTTTGAGCAAGGAACTGGTGCTACTCGTAATTCAATTTCTCAAAGAAGAGAATTTGATGGAAACAATGCACAAGCTTGAGCAAGAATCGGGTCTCTACTTCAATTTGAAGTATTTTGAAGAGAGAATCATGTCTGGAGATTGGGATGAGGTTGAAAAGTACCTCAATGGCTTTACCAAACTTAATGAAAATCGATTCTCCATGAAAATGTATTTTGAGATTAGGAAGCAAAAGTACTTTGAAGCCTTGGACAGACGTGACCGAACAACAGCTCTTGAAATTTTAGTGAAAGATTTGAAGATTTTTTCAACGTATAATGAAGATTTGTACAAAGAAATAACAAATCTCATAACCCTTGAAAATTTTAGGGAGAATGAACAACTATCAAGGTATGGAGATGCTAGAACAACTAGAATGCTGATGATGGTTGAGCTTAGGAAATTGATTGACCTCAATCCCCTCTTCAATGATAAGCTTATCTTTCCTCCATTGAAGACTTCGCGCCTCCGACACCTTATTAATCAAAGTTTGAATTGGCAGCATCAGCTGTGTCGGGACCCGAAGCCGAATCCAGACATCAGTACTTTGTTAGTCGACCATACCTGTTCGCCTCCTGTTCTGCTTCCTGTTACATCTGCTACAAATCATCTATCTTATGCTTCACTTGGAGGATTTCATTTTCAACCACTTACACATGTACCTATAGCACCTAGACCTAATGCTTCAGAAGGTTGGATGAGGGATCCAAAAGGCACTTCCTCGTCTTCTCAATCACTTGCAGCTGCATTAGCTTCATCCTCATCTTCTCAGTCACTTGCAGCTGCATTAGCTTCATCCTCGTCTTCTCAGTCACTTGCAGCTGCATTAGCTTCATCCTCATCTTCTCAATCACTTGCAGCTGCAATAGCTTCATCCTCATCTTCTCAATCACTTGCAGCTGCATTAGCTTCATCGTTGGCTGGTCCTTCAAATCCAGTCTTCGGTTCGAAGCATCCGAGAACACTTAATACTCTTGAACTGATGGATAGCCAAAACAATGGCCGTGATAATAAAAAATTGAGACGGGTGCGGTCTTCAAAGTCTTTTGAAGAGGCCATTTTTCGAGCTTTGCCTCAACCGAACTCTTGGTCGATCGATGATCTTCCTAGAACTGTTATTTGTACATTACATCAGGGATCGAATGTAACATCGATGGAGTTTAATCCTTTCTTTCATTCTTTACTAGCTGTTGGTTGTGAAAATGGTGAAGTTTCATTTTGGGAAACAGGGCTGAGAGAGAGACTGACATCAAAGCCTTTCGAACCATGGAATCTTTCAACTTGTTCTATCGCGTTTCAGGCTATACATACGAAAGACTCGTCTATATCCATCAATCGTGTATCATGGAGCCCGGATGGAGTTTTTTTGGGAGTTGCTTTTTCGAAACATTTGGTTCATTTGTATACATATCAAACACCTAATGACATAAAGCAGCATGTGGAGATTGATGCTCATGATGGTGGTGTTAATGACTTGGGATTTTCATATCCAAACAATAAGCTATGCTTTGTAACTTGTGGAGATGATAAGTTAATAAAGGTATGGGATTTGAATGGAAATAAGACCATGAGCTTTGAAGGTCATGTAGCATCTGTTTATTCTGTTTTACCTAGTCAGAAAGAACATATTCAGGCTATACATACGAAAGACTCGTCTATATCCATCAATCGTGTATCATGGAGCCCGGATGGAGTTTTTTTGGGAGTTGCTTTTTCGAAACATTTGGTTCATTTGTATACATATCAAACACCTAATGACATAAAGCAGCATGTGGAGATTGATGCTCATGATGGTGGTGTTAATGACTTGGGATTTTCATATCCAAACAATAAGCTATGCTTTGTAACTTGTGGAGATGATAAGTTAATAAAGGTATGGGATTTGAATGGAAATAAGACCATGAGCTTTGAAGGTCATGTAGCATCTGTTTATTCTGTTTTACCTAGTCAGAAAGAACATATTCAGagtcgatttctggctgcgggtgaagacaaccaggttaagttttgggatatggatgttgttaatgttctggcttctacagatgctgagggtggtcttcctAATCTTCCTCGCTTGAAGTTCAATAAGGAAGGAAATTTGCTTGCTGTTTCTACAGCAGATGGTGGTTTTAAAGTCCTCGCTAATGCGGACGGTATCAAATTCTTAAGGAACATTGAAGCATCTAAAGAACCATTTTTCACAAAGAGTCCTGGAGGACTTGTTTCTATAGGTAGAGGCAGAGATATTAACATAAATTCGGATGAAGGATCGAAATCTTGGGAATTGACTGAAATAGTTCATCCGGTTCAATGTCGAATCGTTACAGTTCCGGAGGGTATGGGTTCTAATAACAAGGTTGCTTGTCTTGTTTACACAAATTCCGGAAATGGTCTTCTAGCTCTTGGTTCAAAAGGGGTTCAGAAGTTGTGGAAATGGAGCTTCAGTGAATTGAATCCTACTGGAAAGGCAACAGCAAGTGTTGTTCCTCAGCATTGGAGACCAAGTAACGGTATTCTTATGACTAATGATGTCCCTAGTGATTGCGAAATGGCTGTTCCTTGCATAGCACTCTCAAGGAATGATTCCTATGCTATGGCTGCGTGCGGAGGAAATATTTCATTGTTCAACATGGTTTCATTTAAGGTATTGTTTCATTTTTTGCCACCTCCACCAGTTTCAACATGCGTTGTGTTTAGCCCTCAAGACAATAATGTAGTTGCGGTTGGAAGGGCAGATTCAAATATCCAAATTTTCAATGTTAGGTTATATCAGGCTAGATCTCTATTAAAAGGTCACCAGAAGTACATTACCGGTATAGTTTTTTCGCTTCGACTCAATATAATGGTTTCTTCCGGCGCTGATGCTCAGATTTTCTCTTGGAACATGGACACATGGAATAAGAAGAAATCAGTGCCAATCAAATTGCCTAGTGGTGAAAATGCACCTGCTGGTGAGACTAAACTGGAATTCCACATTGATCAAATTAAGTTGCTTGCATGCCATGAGACACAATTAGCAATATATGATGCTTCAAAATTGGAATTGATTTGTCGGTGGGTGCCACAAGATGTGTTGCCTGGTGCCATAACCTCTGCTGTATACTCCTGCAATGGTCGACTAGTTTATGCTACTTTCACTGATGGAAATGTTGGAGTATTTGATGCTGAAACCCTCAAACCTAGATGTCGTATAGCTTCATCTGCATACATACATCAGAGTCAGACCCCATCAAACAGCCAAAATGTATACCCTGTTGTTGTCGCAGCACATCCACATGAGCCCAATCAATTTGCAATTGGACTGTCAGATGGGTCTATTAAGGTTATAGAGCCACCAGAGACTGAAGGATGGCAGGGAATTAAAGTGCCTGTTGTTAATAATGGGAATTAA 3438 0.3874 MASLSKELVLLVIQFLKEENLMETMHKLEQESGLYFNLKYFEERIMSGDWDEVEKYLNGFTKLNENRFSMKMYFEIRKQKYFEALDRRDRTTALEILVKDLKIFSTYNEDLYKEITNLITLENFRENEQLSRYGDARTTRMLMMVELRKLIDLNPLFNDKLIFPPLKTSRLRHLINQSLNWQHQLCRDPKPNPDISTLLVDHTCSPPVLLPVTSATNHLSYASLGGFHFQPLTHVPIAPRPNASEGWMRDPKGTSSSSQSLAAALASSSSSQSLAAALASSSSSQSLAAALASSSSSQSLAAAIASSSSSQSLAAALASSLAGPSNPVFGSKHPRTLNTLELMDSQNNGRDNKKLRRVRSSKSFEEAIFRALPQPNSWSIDDLPRTVICTLHQGSNVTSMEFNPFFHSLLAVGCENGEVSFWETGLRERLTSKPFEPWNLSTCSIAFQAIHTKDSSISINRVSWSPDGVFLGVAFSKHLVHLYTYQTPNDIKQHVEIDAHDGGVNDLGFSYPNNKLCFVTCGDDKLIKVWDLNGNKTMSFEGHVASVYSVLPSQKEHIQAIHTKDSSISINRVSWSPDGVFLGVAFSKHLVHLYTYQTPNDIKQHVEIDAHDGGVNDLGFSYPNNKLCFVTCGDDKLIKVWDLNGNKTMSFEGHVASVYSVLPSQKEHIQSRFLAAGEDNQVKFWDMDVVNVLASTDAEGGLPNLPRLKFNKEGNLLAVSTADGGFKVLANADGIKFLRNIEASKEPFFTKSPGGLVSIGRGRDININSDEGSKSWELTEIVHPVQCRIVTVPEGMGSNNKVACLVYTNSGNGLLALGSKGVQKLWKWSFSELNPTGKATASVVPQHWRPSNGILMTNDVPSDCEMAVPCIALSRNDSYAMAACGGNISLFNMVSFKVLFHFLPPPPVSTCVVFSPQDNNVVAVGRADSNIQIFNVRLYQARSLLKGHQKYITGIVFSLRLNIMVSSGADAQIFSWNMDTWNKKKSVPIKLPSGENAPAGETKLEFHIDQIKLLACHETQLAIYDASKLELICRWVPQDVLPGAITSAVYSCNGRLVYATFTDGNVGVFDAETLKPRCRIASSAYIHQSQTPSNSQNVYPVVVAAHPHEPNQFAIGLSDGSIKVIEPPETEGWQGIKVPVVNNGN 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00981 1145 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 945 980 - -
Car01g00981 1145 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 35 92 IPR006595 -
Car01g00981 1145 SUPERFAMILY WD40 repeat-like 799 1127 IPR036322 GO:0005515
Car01g00981 1145 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 1 561 - -
Car01g00981 1145 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 670 744 - -
Car01g00981 1145 Pfam LisH-like dimerisation domain 5 33 - -
Car01g00981 1145 ProSiteProfiles Trp-Asp (WD) repeats profile. 608 651 IPR001680 GO:0005515
Car01g00981 1145 Gene3D - 556 733 IPR015943 GO:0005515
Car01g00981 1145 Gene3D - 239 555 IPR015943 GO:0005515
Car01g00981 1145 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 561 IPR027728 GO:0006355
Car01g00981 1145 SMART Lish 4 36 IPR006594 GO:0005515
Car01g00981 1145 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 558 670 IPR027728 GO:0006355
Car01g00981 1145 SMART WD40_4 441 484 IPR001680 GO:0005515
Car01g00981 1145 SMART WD40_4 1082 1126 IPR001680 GO:0005515
Car01g00981 1145 SMART WD40_4 1034 1070 IPR001680 GO:0005515
Car01g00981 1145 SMART WD40_4 938 977 IPR001680 GO:0005515
Car01g00981 1145 SMART WD40_4 490 531 IPR001680 GO:0005515
Car01g00981 1145 SMART WD40_4 552 595 IPR001680 GO:0005515
Car01g00981 1145 SMART WD40_4 644 686 IPR001680 GO:0005515
Car01g00981 1145 SMART WD40_4 384 423 IPR001680 GO:0005515
Car01g00981 1145 SMART WD40_4 601 642 IPR001680 GO:0005515
Car01g00981 1145 SMART WD40_4 895 935 IPR001680 GO:0005515
Car01g00981 1145 Pfam WD domain, G-beta repeat 646 686 IPR001680 GO:0005515
Car01g00981 1145 Pfam WD domain, G-beta repeat 608 642 IPR001680 GO:0005515
Car01g00981 1145 Pfam WD domain, G-beta repeat 497 531 IPR001680 GO:0005515
Car01g00981 1145 SMART ctlh 34 92 IPR006595 -
Car01g00981 1145 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Car01g00981 1145 ProSiteProfiles Trp-Asp (WD) repeats profile. 651 695 IPR001680 GO:0005515
Car01g00981 1145 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 558 670 - -
Car01g00981 1145 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 670 744 IPR027728 GO:0006355
Car01g00981 1145 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 761 1144 IPR027728 GO:0006355
Car01g00981 1145 ProSiteProfiles Trp-Asp (WD) repeats profile. 497 540 IPR001680 GO:0005515
Car01g00981 1145 MobiDBLite consensus disorder prediction 240 261 - -
Car01g00981 1145 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 761 1144 - -
Car01g00981 1145 SUPERFAMILY WD40 repeat-like 459 830 IPR036322 GO:0005515
Car01g00981 1145 Gene3D - 796 994 IPR015943 GO:0005515
Car01g00981 1145 Gene3D - 995 1138 IPR015943 GO:0005515
Car01g00981 1145 ProSitePatterns Trp-Asp (WD) repeats signature. 964 978 IPR019775 -
Car01g00981 1145 ProSiteProfiles Trp-Asp (WD) repeats profile. 945 986 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00981 Car-Chr1 9190559 9199601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00981 496 714 Miscellaneous Gene Families AT5G08390 24.896 2.17e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00981 - - cam:101494105 1941.01