Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00970 ATGGGTGTTGTTATTCAAGAATATGCTACCCCTGCTGCTGTTCCCCCTGCTAAGCTCTTCAAAGCCATGTCAATAGATATTCATAACCTTTTCCCAAAAATTGTGCCAATTATTGACAGTGTTCAGTTGACTGAAGGAACTGGTGAAGCTGGCACCATCAAGATACTCAACATAAAAGAAGGGGACCAAATCAAGCAAGTGCTGCACAGAGTGGATGAAATTGATGAAATAAAATTTATATACAATTTCAGCATAATTGGAGGCACTGGTTTAGCTGACACATTGGAAAAAGTGTCATTCAAGAGCCAATTGTTTGATGACGAAAATGGAGGAACAATTAGGAAAGTACATGTTGAGTATTTTACCAAAGGTGATTATCAACTCACTGAGGAGGAGCTCAAAGCTGGTAAAGATAAGGTTGAAGGCCTTATTAAGATTTGTGAAGGTTACCTTTTGGCTAATCCTGATTATTGA 474 0.384 MGVVIQEYATPAAVPPAKLFKAMSIDIHNLFPKIVPIIDSVQLTEGTGEAGTIKILNIKEGDQIKQVLHRVDEIDEIKFIYNFSIIGGTGLADTLEKVSFKSQLFDDENGGTIRKVHVEYFTKGDYQLTEEELKAGKDKVEGLIKICEGYLLANPDY 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00970 157 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Car01g00970 157 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Car01g00970 157 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Car01g00970 157 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Car01g00970 157 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Car01g00970 157 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Car01g00970 157 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Car01g00970 157 PANTHER - 1 157 - -
Car01g00970 157 CDD Bet_v1-like 2 151 - -
Car01g00970 157 PANTHER PATHOGENESIS-RELATED PROTEIN 10 1 157 - -
Car01g00970 157 SUPERFAMILY Bet v1-like 7 157 - -
Car01g00970 157 Pfam Pathogenesis-related protein Bet v 1 family 10 154 IPR000916 GO:0006952
Car01g00970 157 Gene3D - 2 157 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00970 Car-Chr1 9080206 9082313 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00970 - - gmx:100810644 211.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00970 01 9080206 9082313 Car01g00970 01 9080206 9082313 ECH
Car07g00535 07 4732341 4734058 Car01g00970 01 9080206 9082313 PCT