Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00946 ATGAGGGATATGGCTTTGCAGAAGTATGTTCCTTCTGGTGATGCACCTACTGTTAATTTGAAACATTTGAGTTTCTCTTGTAAGGTCCCTGAGAAAACTCAGCCTGATGTGGCAAATCAGAATCATGACATGGATGTGGATGTTGATCTTAGGGAAGTATATTTTCTCATTATGCACTTCCTTTCTGCTGGGCCATGTCATAAAACTTATTTACAGTTTTGGAATGAGCTTCGGGAGAATCAACTTTTGCCTAGAAGGTATCATGCTTGGTATTCAAGGAGTGGGGCATGTAGTGGAGATGTAGACGATGATGGTCAATCATTCCCTTTAAGTTACAATAAGTTGGTGGAGAGGTATCCTCATGTTGGAAAGGATCACTTGGTAAAGCTTTTGAAGCAATTGTTATTAAACACAGCCTCCGTGTCACCAGGCACGAGTACTGGAAATGCTCCAAATGCAGCTGATGTACCTACTCTTTTGGGAAGGGGATCATTTTCACTTCTCAGCTATGACAGGGATAAAATGAATGAAGAAGTCAAACCACCACCTCCTTATATGCGCTGGCCTCATATGAAAGCCAATCAGGTTCACGGGCTTCATTTGAGGGAAATCGGGGGTGGTTTTTCAAGACACCACCGTGCACCATCTATACGTGCTGCATGCTATGCCATTGCAAAACCTTCTACTATGGTGCAGAAGATGCAAAATATCAAGAGAATAAGAGGGCACCGTAATGCTGTTTATTGTGCTATATTTGATCGGTCAGGAAGATATGTTATTACTGGTTCAGATGATCGACTCGTAAAAATTTGGTCAATGGAAACTGCATATAGTTTGGCCAGTTGCCGTGGACACGAAGGTGACATTACTGACTTGGCTGTGAGTTCAAACAATGCTTTAGTTGCATCCTCATCAAATGACTGTATTATTCGAGTTTGGCGCTTGCCAGATGGCTTACCAATATCAGTTTTGCGGGGACATACTGGAGCTGTTACAGCCATAGCCTTTAGTCCCAGACCTAATGCTGTTTATCAGCTTTTATCTTCCTCTGACGATGGAACTTGTAGGATATGGGATGCAAGGCATACCCAGTCAAGTGCAAGATTATATGTTCCAAGGCCTTCTGATTCTGTTGGAAGGAGCAGTGGCCCATCCTCAAATGCAATGCCACAGAGCCATCAAATTTTTTGCTGTGCATTTAATGCTAATGGAACTGTCTTTGTCACTGGTAGCTCTGATAATCTTGCGAGGGTCTGGAATGCTTGTAAACTTAGTATGGAAGATGCAGACCAACCAACTCATGAGATAGATGTACTGTCTGGTCATGAAAATGATGTAAACTATGTGCAATTTAGTGGATGTGCAGTAGCATCTCGATTTTCCACAACAGAAACTTGGAAGGAGGAAAATATTCCCAAATTCAAGAATTCCTGGTTGAATCATGACAACATAGTCACCTGCTCTCGTGATGGGAGTGCTATTATATGGATTCCAAAATCACGCAGGTCACATGGAAAAAGTGGTCGCTGGACTCGGGCATATCATCTCAGAGTTCCACCTCCACCTATGCCTCCACAACCTCAGAGAGGTGGTCCACGCCAGAGAATTCTACCAACTCCACGTGGTGTAAATATGATTGTTTGGAGCCTAGACAACCGATTTGTCCTTGCAGCTATCATGGATTGCCGAATCTGTGTTTGGAATGCTTCTGATGGCAGCTTAGTGCACTCATTGACTGGACATACTGAATCTACATATGTTCTAGATGTTCATCCTTTTAATCCGAGGATAGCAATGAGTGCTGGATATGATGGAAGAACTATTGTATGGGATATATGGGAAGGTGTGCCAATCAGAATATATGAGATATCACGTTTCAAGTTGGTGGATGGAAAGTTTTCTCCGGATGGAACATCAATTATACTATCTGATGATGTTGGTCAACTATATATATTAAACACAGGCCAAGGTGAGTCCCAGAAAGATGCGAAATATGATCAGTTCTTTCTTGGTGATTATCGGCCTCTCATTCAAGACACTCATGGTAATGTACTTGACCAGGAAACTCAGATCATTCCATATCGACGTAATTTGCAAGATTTGCTTTGTGATTCAGCAATGATACCATACCCAGAACCTTATCAGAGTGAATTTCAGCAGAGACGACTTGGAGCTTTAGGCCTTGAGTGGCGCCCTTCATCACTAAAGCTTGCTGTTGGCCCTGACTTCAGTCTGGACCCAGATTATCATATGCTTCCATTGGCTGACTTGGACATGCTTACAGAACCACTACCTGAGTTTATAGATGCGATGGATTGGGAGCCAGAAATTGAAGTGTTTGCTGATGATACCGATTCAGAATATAATTTAACCGAAGATAATTCTTCCCGCGGTGAGAAAGGATGTTCAAGCTCCAACGCCTCTGGTGATACTGGTTGCAGCACAGATGACAGTGACGATGAGGACACTCACGTGGATTGCATTCGTAGATCGAAGAGGAAAAAACAGAAGACCGGAATTGAGATTATGACTTCTTCTGGGAGACGTGTGAAAAGGAGGAATTTGGATGAGTGCGAAGACAACGTTCTCAGTAGTAGCCGAAGTAGGAAGGGAAAAAGTGGACAAAAAATATCAAGGAGGAAATCTTCAAAGTCAAAATCTTCCAGACCTCAAAGAGCTGCTGCACGCAATGCTCTGCATTTATTCTCAAAAATTACAGGTGCACCAACAGAAAGAGAAGAAGATAGTTTGGTTAGTGATTCTTCAGATAGTGACTCAACATTGCAAGAGTCTAATATTGACAGTGATGAATCCGGTAGAGCTTCCCAGAATGACCAACGGAATTATTCTAAGGGAAAAGAAGTATTACTCTATGAATCAGAGGACACAAAATCTCACGAGTTGACTGATACTAATGTAAATGCAACAAACAGGAGGAGGTTAGTCCTCAAATTGCCAATTCGGGATTCATCCAAACCCACACATGAGTTTGACAACCAGGCTGGGTTGGTTGGATCGTCGTCAAAAACTGCTCAAGAATATACTGATTTTAATAGGAACAGACCGAGTTCTACAGAGCCCGGATATTGTTTTGGCAATGGAAGTTACTCTTCAATTGAAAGATCAGGTCAAGTAAAACTTGACCAGGTAGCCGACCATGTAAACTTACTAGAGAAAATTAGATGGGGGGTGGTTAGGGCTCGTTCATCTAAACCTCTCCGAGCAAGAGAAGCTGTGCCACCAGGTGGAAATCCCAACTCTGTAAAATGTCCAAACCTTCTCAATGAAACAGAAAATGTTAGTATTGGGCATGAGAAAGTGGACAAGGACTTCAGCAGTACATCAACTCCTGCTTTAGAAATCCAAAATGATGATAAGGTAGATAGTTTGATAGAAATAGATGAAAATTGTGCTGGTACTACCTCTCAGCCTTTTAAATCTACTGAGAATGGAGACCCACTCACAGTTTCCAGCAATTACAGAGATCAAGATGAATCACTAGTTTCTGCATGCATGATTCCCCAGGATACTATTGTATCTGTTGGCCATAATGGGGCTGACCAACTACCTGAACCAAATATTGGTTTTCCTTCTGTTTCAACAAAGCTAAGGTCTAAAAGGGGTACGAGGAATCCTGAAAGTCCATGTAAGCCTGAAACAAAATCTTCAGTGCTAAAGAATCATGCATCTAGCAGTAATGTTGATAATGATTTGAACAATGAAGAGCATGTAGTTGTCGTTAAGGATGACAACAATACTAGAACATCTAATCTGAGAGAAAATGGTTCTCGAGAAGTTGATGCTCAGGATAAACAATTTAGTACTTCACATGATTCACTAGAACCATATTCACGCAGGGATAAAATGTTCAAAGCTGTTTATAGAAGAACAAGATCACATCGGGCTGTGACTAATTTAGCTGATGGTAGTGGCTTGGGAGAATCCACTTCAAATGGGAGCAACAGTAATTTCAATGTGGCAGTGGACAGTAATGGCACAAATGAAGCTCTTCATACCAATGGTTCCCTAGAGTTGGAACCAGGTACTTGTGACCCAAGTAATGAGCAGAGTAATCTTAAAGTGCAGGAAGGAAATGGATCTTGTATACTTAGGATTCCTCATGCTGTTCTCAGAAATAAAGGAAAACTCACAGAAGAAGAGAAGGGTTCTGGTTCAAAATTGACTGTCGGTTTGAGGTCCACTAGGAATCGGAGGTCTACTTATAATATTCGTGAGACTAGTCCTGTAAATAGAAGGAAATCACTACAATCAGCTGCGAAGGGATCCTGGTTGCTGTTATCAACTCATGAGGAAGGATGTAGATATATTCCTCAACAGGGAGATGAAGTTGTATATTTACGACAGGGGCACCAGGAATATATAGATTATAGCCGAAAAAGAGAATCAGGGCCTTGGATGTCAATTAAGGAACATCTAAGAGCTGTAGAATATTGTAGAGTTCAAAGCCTTGAGTATTCTCATGTTCCAGGGTCTGGTGATAGCTGCTGCAAAATGACCCTCCAGTTTGTAGATCCAAATTCAAGTGTTGTTGGCAAAACTTTTAAATTAACCCTGCCCGAAGTGACTAGTTTCCCTGATTTTCTTGTTGAGAGAACTAGGTTTGATGCTGCTATCCAAAGAAATTGGACACGCAGGGATAAATGCAGGGTTTGGTGGAAGAATGAGGATAATTCCTCTGGTAATTGGTGGGAGGGTCGAATTCAGTTTGTAAAAGCCAAATCTTCTGAATTTCCAGACAGTCCATGGGAGAGATATAGTGTTCGGTACAAGAGCGACCTCTCTGATGAACATTTGCATAGTCCTTGGGAGCTTTTTGACGCTGATACTCTATGGGAACAGCCCCATATTGATGAGAACACAAGAAATAAACTGCTATCTGCTCTCACCAAATTACAGCAGTCAGGCAACAAAGTTCAGGATCGTTATGGGTTGCATGAGTTGAACAAAATTTCAAATAAGTCGAAATTTACAAACAGGTTTCCTGTTCCTCTGTCTATTGAATTGATACAGTCAAGGTTGGAGAATAATTACTACCGGAGTTTGGAGGCACTGGAGCATGATGTCTCAATTCTCCTATCTAACACCACCTCTTTTTTTGAAAAGGATGCAGAGATGACGGCCAAAATCAAACGCCTAGCAGAGTGGTTTGCACGGACATTACCATCTGTATAA 5193 0.4169 MRDMALQKYVPSGDAPTVNLKHLSFSCKVPEKTQPDVANQNHDMDVDVDLREVYFLIMHFLSAGPCHKTYLQFWNELRENQLLPRRYHAWYSRSGACSGDVDDDGQSFPLSYNKLVERYPHVGKDHLVKLLKQLLLNTASVSPGTSTGNAPNAADVPTLLGRGSFSLLSYDRDKMNEEVKPPPPYMRWPHMKANQVHGLHLREIGGGFSRHHRAPSIRAACYAIAKPSTMVQKMQNIKRIRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETAYSLASCRGHEGDITDLAVSSNNALVASSSNDCIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPNAVYQLLSSSDDGTCRIWDARHTQSSARLYVPRPSDSVGRSSGPSSNAMPQSHQIFCCAFNANGTVFVTGSSDNLARVWNACKLSMEDADQPTHEIDVLSGHENDVNYVQFSGCAVASRFSTTETWKEENIPKFKNSWLNHDNIVTCSRDGSAIIWIPKSRRSHGKSGRWTRAYHLRVPPPPMPPQPQRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGVPIRIYEISRFKLVDGKFSPDGTSIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLIQDTHGNVLDQETQIIPYRRNLQDLLCDSAMIPYPEPYQSEFQQRRLGALGLEWRPSSLKLAVGPDFSLDPDYHMLPLADLDMLTEPLPEFIDAMDWEPEIEVFADDTDSEYNLTEDNSSRGEKGCSSSNASGDTGCSTDDSDDEDTHVDCIRRSKRKKQKTGIEIMTSSGRRVKRRNLDECEDNVLSSSRSRKGKSGQKISRRKSSKSKSSRPQRAAARNALHLFSKITGAPTEREEDSLVSDSSDSDSTLQESNIDSDESGRASQNDQRNYSKGKEVLLYESEDTKSHELTDTNVNATNRRRLVLKLPIRDSSKPTHEFDNQAGLVGSSSKTAQEYTDFNRNRPSSTEPGYCFGNGSYSSIERSGQVKLDQVADHVNLLEKIRWGVVRARSSKPLRAREAVPPGGNPNSVKCPNLLNETENVSIGHEKVDKDFSSTSTPALEIQNDDKVDSLIEIDENCAGTTSQPFKSTENGDPLTVSSNYRDQDESLVSACMIPQDTIVSVGHNGADQLPEPNIGFPSVSTKLRSKRGTRNPESPCKPETKSSVLKNHASSSNVDNDLNNEEHVVVVKDDNNTRTSNLRENGSREVDAQDKQFSTSHDSLEPYSRRDKMFKAVYRRTRSHRAVTNLADGSGLGESTSNGSNSNFNVAVDSNGTNEALHTNGSLELEPGTCDPSNEQSNLKVQEGNGSCILRIPHAVLRNKGKLTEEEKGSGSKLTVGLRSTRNRRSTYNIRETSPVNRRKSLQSAAKGSWLLLSTHEEGCRYIPQQGDEVVYLRQGHQEYIDYSRKRESGPWMSIKEHLRAVEYCRVQSLEYSHVPGSGDSCCKMTLQFVDPNSSVVGKTFKLTLPEVTSFPDFLVERTRFDAAIQRNWTRRDKCRVWWKNEDNSSGNWWEGRIQFVKAKSSEFPDSPWERYSVRYKSDLSDEHLHSPWELFDADTLWEQPHIDENTRNKLLSALTKLQQSGNKVQDRYGLHELNKISNKSKFTNRFPVPLSIELIQSRLENNYYRSLEALEHDVSILLSNTTSFFEKDAEMTAKIKRLAEWFARTLPSV 1730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00946 1730 MobiDBLite consensus disorder prediction 1072 1092 - -
Car01g00946 1730 Gene3D - 477 669 IPR015943 GO:0005515
Car01g00946 1730 ProSitePatterns Trp-Asp (WD) repeats signature. 598 612 IPR019775 -
Car01g00946 1730 MobiDBLite consensus disorder prediction 846 866 - -
Car01g00946 1730 MobiDBLite consensus disorder prediction 1182 1280 - -
Car01g00946 1730 CDD Bromo_WDR9_I_like 1602 1730 - -
Car01g00946 1730 ProSiteProfiles Trp-Asp (WD) repeats profile. 388 420 IPR001680 GO:0005515
Car01g00946 1730 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 323 IPR001680 GO:0005515
Car01g00946 1730 SMART WD40_4 432 497 IPR001680 GO:0005515
Car01g00946 1730 SMART WD40_4 571 611 IPR001680 GO:0005515
Car01g00946 1730 SMART WD40_4 233 272 IPR001680 GO:0005515
Car01g00946 1730 SMART WD40_4 381 420 IPR001680 GO:0005515
Car01g00946 1730 SMART WD40_4 317 359 IPR001680 GO:0005515
Car01g00946 1730 SMART WD40_4 275 314 IPR001680 GO:0005515
Car01g00946 1730 SMART WD40_4 530 568 IPR001680 GO:0005515
Car01g00946 1730 MobiDBLite consensus disorder prediction 783 952 - -
Car01g00946 1730 ProSiteProfiles Bromodomain profile. 1670 1713 IPR001487 GO:0005515
Car01g00946 1730 MobiDBLite consensus disorder prediction 1241 1280 - -
Car01g00946 1730 MobiDBLite consensus disorder prediction 872 887 - -
Car01g00946 1730 Gene3D - 213 389 IPR015943 GO:0005515
Car01g00946 1730 MobiDBLite consensus disorder prediction 921 950 - -
Car01g00946 1730 ProSiteProfiles Trp-Asp (WD) repeats profile. 578 612 IPR001680 GO:0005515
Car01g00946 1730 Gene3D - 1626 1730 IPR036427 GO:0005515
Car01g00946 1730 PANTHER WD REPEAT DOMAIN 9 20 1728 - -
Car01g00946 1730 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 282 315 - -
Car01g00946 1730 SUPERFAMILY WD40 repeat-like 231 655 IPR036322 GO:0005515
Car01g00946 1730 MobiDBLite consensus disorder prediction 795 813 - -
Car01g00946 1730 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 20 1728 - -
Car01g00946 1730 MobiDBLite consensus disorder prediction 1215 1239 - -
Car01g00946 1730 SUPERFAMILY Bromodomain 1664 1727 IPR036427 GO:0005515
Car01g00946 1730 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 240 275 - -
Car01g00946 1730 MobiDBLite consensus disorder prediction 1383 1406 - -
Car01g00946 1730 Gene3D - 390 458 IPR015943 GO:0005515
Car01g00946 1730 MobiDBLite consensus disorder prediction 1138 1157 - -
Car01g00946 1730 ProSiteProfiles Trp-Asp (WD) repeats profile. 240 281 IPR001680 GO:0005515
Car01g00946 1730 Pfam Bromodomain 1663 1716 IPR001487 GO:0005515
Car01g00946 1730 Pfam WD domain, G-beta repeat 235 272 IPR001680 GO:0005515
Car01g00946 1730 Pfam WD domain, G-beta repeat 572 611 IPR001680 GO:0005515
Car01g00946 1730 Pfam WD domain, G-beta repeat 320 359 IPR001680 GO:0005515
Car01g00946 1730 Pfam WD domain, G-beta repeat 279 313 IPR001680 GO:0005515
Car01g00946 1730 Pfam WD domain, G-beta repeat 392 420 IPR001680 GO:0005515
Car01g00946 1730 ProSiteProfiles Trp-Asp (WD) repeats profile. 324 368 IPR001680 GO:0005515
Car01g00946 1730 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 324 359 - -
Car01g00946 1730 CDD WD40 236 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00946 Car-Chr1 8795248 8820924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00946 232 451 Miscellaneous Gene Families AT5G08390 22.172 2.04e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00946 K11797 - gmx:100818665 2748.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00946 01 8795248 8820924 Car01g00946 01 8795248 8820924 ECH