Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00914 ATGGAGGCACTATTCAAGGGTTCTTATCTCTTACCTAAACCTCCAAAAACCACTATGATGTTGTTAAGAAACCCTGGTACATTCAATTTCAATCATTTCCCAAATGGGTCCCTTTTTTCTTCTTCATCTTCATTTTCAGGGCAATTTTCTGTTCAGAATAAGCCCAGAAAATCATTTTCATTTATTATGAATGCCCGGAAGAAAGAAGATAATCACAGCTTTGTTCCCAAACCAGATGAAATCACTGGGTTCTTCCCTGAATCTGTTCTTCTTAAAAAGAAAGCAATTGAGGAAGATGGTAAGCTTCTTCCAGAGTTTGAAGATGCTGATGAAAGAGAACAATATGAATCACTTAAGCTTCACCTGGAAAGTGACATGGACGTTGAATTATTGCGCCACTATGAGATTGTTTACTTAATTCATGAAAAGCACGAAGAAGAGGTTTCAGCTGTCAATCAGAAAGTTCAAGACTTTTTGCTTGAGAAGAAAGGCAGAGTATGGAGATTCAGTGATTGGGGTATGAGAAGGCTGGCTTACAAAATAAAGAAAGCAAATAATGCGCACTACATTTTGATGAACTTCGAGTTGGATGCCAAATACATCAACGAGTTCAAGACTTTGTTGGACAAAGATGAAAGAGTTATTCGACATCTTTTAATAAAGAGGGACGAGGCAATCACCGAAGATTGCCCTCCTCCTCTGGAGTTCAATACTTTTTatgctaatgtagatgatgaagaagacgatgaagaatttgatgatgaatgggatgatgaagacgaaggcgaggaagatggctatgatgatgatgattttgagggtaatgaAGGAGTTTTCATTGTAGAGGATGATGAACTAGATGAATTGGAAATTTCAAAATTAAAGCTATTTATGGATCCTTTTTGTAGGGCTATTAAGAGCACAGTAAAAGGATTCCCTAGGCCTTTGTTAGATCTAAGCAAATCATCATTTGCCAAGGTGATGGATAGTGCCTTTGGTCGACCTTTGGTGCCTCCCTTTGATCCTTATGCCAATGATATCAATTTTCTTCTTGCATCTTATGTAATTCCTTATGTTGGTCTTACTGGCTATGTTGGTGCCAATCCACTCTTGCAAAATGCTACTTCAAGGAAGCTTGTTGCAGGCCTTTTGGGAGTAGAATCAGGCCAAGATGCAGTCATACGAACATTGTTGTACGAACGACATTCATCAGTGGTGAAACCTTATGGAGTGAGTGTTGCAGAATTCACCAATCACATTTCAACACTTAGAAATAAATTAGGAAAAGATGGTTTGAAAGATGAGGGTCTTATGGTCCCTATAGGACAAGGTGCTGAGGGTAGAGTCTTAGGAAACATTCTTGCTGGGGACAAAGACTCGTTGTCATATCCAAGAACACCACAAGAAATATTGAGGATTGTGTATGGAAGTGGTAATGAATGTGTCCCTGGTGGCTTCTACCCTGATGGAGGAAATGGTCGTATAGCAAAATCTTACTTAAAACTTACTTAA 1512 0.3598 MEALFKGSYLLPKPPKTTMMLLRNPGTFNFNHFPNGSLFSSSSSFSGQFSVQNKPRKSFSFIMNARKKEDNHSFVPKPDEITGFFPESVLLKKKAIEEDGKLLPEFEDADEREQYESLKLHLESDMDVELLRHYEIVYLIHEKHEEEVSAVNQKVQDFLLEKKGRVWRFSDWGMRRLAYKIKKANNAHYILMNFELDAKYINEFKTLLDKDERVIRHLLIKRDEAITEDCPPPLEFNTFYANVDDEEDDEEFDDEWDDEDEGEEDGYDDDDFEGNEGVFIVEDDELDELEISKLKLFMDPFCRAIKSTVKGFPRPLLDLSKSSFAKVMDSAFGRPLVPPFDPYANDINFLLASYVIPYVGLTGYVGANPLLQNATSRKLVAGLLGVESGQDAVIRTLLYERHSSVVKPYGVSVAEFTNHISTLRNKLGKDGLKDEGLMVPIGQGAEGRVLGNILAGDKDSLSYPRTPQEILRIVYGSGNECVPGGFYPDGGNGRIAKSYLKLT 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00914 503 TIGRFAM S6: ribosomal protein bS6 132 223 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Car01g00914 503 CDD bS6 133 222 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Car01g00914 503 Hamap 30S ribosomal protein S6 [rpsF]. 131 224 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Car01g00914 503 ProSitePatterns Ribosomal protein S6 signature. 173 182 IPR020815 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Car01g00914 503 MobiDBLite consensus disorder prediction 246 269 - -
Car01g00914 503 Pfam Ribosomal protein S6 133 221 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Car01g00914 503 Pfam Ferritin-like domain 303 400 - -
Car01g00914 503 SUPERFAMILY Ribosomal protein S6 131 231 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Car01g00914 503 PANTHER DESICCATION-LIKE PROTEIN 302 501 - -
Car01g00914 503 Coils Coil 141 161 - -
Car01g00914 503 Gene3D - 127 229 IPR014717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00914 Car-Chr1 8387831 8404669 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00914 - - gmx:100790128 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00914 01 8387831 8404669 Car01g00914 01 8387831 8404669 ECH