Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00906 ATGGTGAAGGTGCGTATGAACACGGCCGATGTTGCCGCCGAAGTCAAATGCCTACGACGCTTAATCGGAATGCGATGCTCCAATGTCTATGATCTCACTCCCAAGACGTACGTTTTCAAGCTTATGAACAGCAGTGGAATGACTGAATCCGGTGAGAGCGAGAAAGTTCTGTTACTCATGGAAAGTGGTGTTAGATTGCACACTACTGTGTATATGCGTGACAAAAGCAATACTCCTTCTGGTTTTACGCTCAAATTGAGGAAACATATTAGGACTAGAAGGCTCGAGGATGTGCGACAACTTGGGTATGATCGGATTGTTCTCTTTCAATTTGGACTGGGGGATAATGCAAATTATGTTATATTAGAGTTATATGCTCAAGGCAACATCATCCTCACAGATTCTAGTTTTACTGTCATGACTCTACTTCGATCCCACAGGGATGATGATAAGGGGCTTGCAATCATGTCACGGCATCGTTATCCTATGGAAAGTTGTCGAGTTTTTGAGCGAACTACTACAACAAAGCTGCAGACAGCCCTAACGTCTTCCAAGGAAGATATCAATGATGAGGCTGTTCAGGCCAATGGAAATGGAACTGATCTTTCTTATGTAGAGAAAGATAAGCAAGGATCCCGAAAAGGTGGGAAGTCATTTGCCACTTTGAAAATTGTCCTTGGGGAGGCACTCGGTTATGGACCTGCACTTTCTGAGCATATAATATTAGATGCTGGTTTAATCCCCAATGAGAAAGTACCCAAAGATAAAACGTGGGATGATGCTACTGTTCAGGCTTTGCTCCAAGCTGTTGGAAAGTTTGAAGATTGGATGCAAAATATCATTTCAGGCGAAATCGTTCCAGAAGGATACATTTTGATGCAAAACAAAAATTTGGGGAAGGATTCTTCTGTATCTCAACTAGAAAGTGTTAGACAGATCTATGATGAGTTCTGCCCCATCCTACTTAACCAGTTTAAGTCAAGGGATCATACAAAGTTTGAGACATTTGATTTAGCTTTGGATGAATTCTACAGCAAAATTGAGAGTCAAAGGTCTGAACAACAGCACAAAGCTAAAGAGAACTCAGCTCTTCAGAAACTTAGTAAGATACGCAATGATCAGGAGAATCGAGTGCACACTTTGAGGAAAGAAGCTGATCACTGTGTTAAAATGGCTGAATTGATAGAATACAACTTAGAAGATGTGGATGCTGCTATATTAGCTGTTCGTGTATCTCTTGCTAAAGGTATGAGTTGGGATGACCTTGCTCGGATGGTGAAGGAAGAAAAGAAAGCTGGAAACCCTGTAGCTGGTCTTATCGACAAGCTCCATCTTGAAAGGAATTGCATGACTTTACTGTTAAGCAACAATCTCGACGAAATGGATGATGATGAGAAGACACTCCCTGCAGATAAGGTTGAAGTTGATTTAGCTCTCTCAGCACATGCCAATGCTCGGAGGTGGTATGAACTGAAGAAGAAACAGGAGAGCAAACAGGAAAAGACGATAACTGCCCATGAAAAGGCTTTTAAAGCTGCAGAGAGAAAGACTCGCCTACAGCTTAGTCAGGAAAAAACTGTTGCTTCAATTTCGCATATGCGCAAAGTTCACTGGTTTGAGAAATTTAATTGGTTCATTAGCAGTGAGAATTATTTGGTTATCAGTGGACGTGATGCCCAGCAAAATGAGATGATAGTAAAGCGTTATATGTCAAAAGGCGATCTGTATGTGCATGCCGAGCTGCATGGAGCTTCTAGTACAGTTATCAAGAATCACAAACCTTTGCAGCCAGTTCCACCGCTTACCCTAAACCAAGCAGGATGTTTCACAGTCTGCCATAGCCAGGCATGGGATTCGAAAATTGTTACTAGTGCCTGGTGGGTTTATCCTCATCAGGTTAGTAAAACTGCTCCTACTGGTGAATATCTGACAGTAGGGAGTTTCATGATACGGGGAAAGAAAAATTTTCTTCCACCAAGCCCTCTTATCATGGGTTTTGGCCTGCTATTTCGCTTGGATGAGAGTTCATTGGGATCACATTTAAATGAAAGGAGAGTAAGAGGAGAGGAGGAAGCAATAGATGATGTTGTAGAAACTGGCCCTGTTGAAGAGCAATCTGATTCAGCGTCCGAGAACGATGTTACAGATGAAAAATCTGCTGCAGATTCTGAAAGGAATGGTAATCTATCTGCAGATTCAGCCATACCCCTATCAGAAGACTTTCTTGCAAACTCATCTCCAACTAGTTTGGCTACAATTAATGACAAAACTGCAGTTTCAGATGACTTTTCTGCAAAAGATACAAGTATAATCGATATGCTTGATAGTGAGAAATTATCTGACATTGGTGAAAATGGCTTAGCATCTGTCTCCCCTCAACTTGAGGAACTTATTGATCGAGCTCTGGGACTTGGATCTGTTGCCAAATCAAATAAAAGTTATGAAGCTGAGAACACTCGGGTTGATTCAAGCAGTGAGCACCATATTGAACCAAGCAAACCTGCAGTAAGGGATAAACCATATGTATCAAAAGCTGAGAGGAGAAAGCTTAAAAATGAACAGAAACATGGAGAAGCCTATCCAAGTGTTGAACATGGAAAGGACGAATCAAAAATAAAAGATATTTCTGGTAATCTGCATGCAAAAGATGCTCAGAATTTGAAGACAGGTGGTGGTCAAAAGTTAAGCCGTGGACAGAAGGGAAAACTTAAGAAGATAAAGGAGAAGTATGCTGACCAAGACGAAGAAGAAAGGAGCATCCGAATGACATTATTGGCTTCTTCTGGAAAACCAATCAAGAAAGAAGAGACATTATCTGGAAATGAACCGTCGGACAAAGGGAAAAAATCTGACAGTGGTCCTGTAGATGCTCCCAAAATATGTTACAAGTGTAAGAAGGTAGGTCATTTATCTCGGGATTGTAAGGAGCAATCAACTGATCTGTTGCAAAGTCATGCTGTCAGTGAAGCTGAAGAAAATCCCAACATGAGTGCTTCAAACATTTCCTTAGAAGATAGAGTGGCAATGGAAGAAGATGATATTAATGAAATAGGAGAAGAAGAGAAAGAAAAACTAAATGATGTAGATTACTTGACAGGGAACCCACTCGCAAATGACATTCTCTTATATGCTGTTCCAGTATGTGGTCCATACAATGCAGTTCAGTCTTACAAGTATCGAGTGAAGATAATTCCTGGGCCTGTTAAGAAAGGAAAAGCTGCAAAAACTGCAATGAACTTATTCAGCCACATGTCAGAAGCAACAAATCGGGAGAAGGAGTTGATGAAAGCCTGTACAGATCCTGAATTAGTTGCTTCAATTGTTGGTAATGTGAAGATAACTGCAGCTGGTCTTACTCAATTAAAGCAAAAGCAAAAGAAAGGCAAGAAGAGTGCCAAACAACAGAGTTAG 3411 0.4099 MVKVRMNTADVAAEVKCLRRLIGMRCSNVYDLTPKTYVFKLMNSSGMTESGESEKVLLLMESGVRLHTTVYMRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIVLFQFGLGDNANYVILELYAQGNIILTDSSFTVMTLLRSHRDDDKGLAIMSRHRYPMESCRVFERTTTTKLQTALTSSKEDINDEAVQANGNGTDLSYVEKDKQGSRKGGKSFATLKIVLGEALGYGPALSEHIILDAGLIPNEKVPKDKTWDDATVQALLQAVGKFEDWMQNIISGEIVPEGYILMQNKNLGKDSSVSQLESVRQIYDEFCPILLNQFKSRDHTKFETFDLALDEFYSKIESQRSEQQHKAKENSALQKLSKIRNDQENRVHTLRKEADHCVKMAELIEYNLEDVDAAILAVRVSLAKGMSWDDLARMVKEEKKAGNPVAGLIDKLHLERNCMTLLLSNNLDEMDDDEKTLPADKVEVDLALSAHANARRWYELKKKQESKQEKTITAHEKAFKAAERKTRLQLSQEKTVASISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDLYVHAELHGASSTVIKNHKPLQPVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPSPLIMGFGLLFRLDESSLGSHLNERRVRGEEEAIDDVVETGPVEEQSDSASENDVTDEKSAADSERNGNLSADSAIPLSEDFLANSSPTSLATINDKTAVSDDFSAKDTSIIDMLDSEKLSDIGENGLASVSPQLEELIDRALGLGSVAKSNKSYEAENTRVDSSSEHHIEPSKPAVRDKPYVSKAERRKLKNEQKHGEAYPSVEHGKDESKIKDISGNLHAKDAQNLKTGGGQKLSRGQKGKLKKIKEKYADQDEEERSIRMTLLASSGKPIKKEETLSGNEPSDKGKKSDSGPVDAPKICYKCKKVGHLSRDCKEQSTDLLQSHAVSEAEENPNMSASNISLEDRVAMEEDDINEIGEEEKEKLNDVDYLTGNPLANDILLYAVPVCGPYNAVQSYKYRVKIIPGPVKKGKAAKTAMNLFSHMSEATNREKELMKACTDPELVASIVGNVKITAAGLTQLKQKQKKGKKSAKQQS 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00906 1136 Pfam NFACT protein C-terminal domain 1021 1113 IPR021846 -
Car01g00906 1136 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 3 1124 - -
Car01g00906 1136 SMART c2hcfinal6 960 976 IPR001878 GO:0003676|GO:0008270
Car01g00906 1136 Gene3D - 937 984 - -
Car01g00906 1136 MobiDBLite consensus disorder prediction 815 878 - -
Car01g00906 1136 ProSiteProfiles Zinc finger CCHC-type profile. 961 976 IPR001878 GO:0003676|GO:0008270
Car01g00906 1136 Pfam NFACT protein RNA binding domain 541 652 IPR008532 -
Car01g00906 1136 MobiDBLite consensus disorder prediction 815 954 - -
Car01g00906 1136 Pfam Zinc knuckle 960 976 IPR001878 GO:0003676|GO:0008270
Car01g00906 1136 PANTHER - 3 1124 - -
Car01g00906 1136 SUPERFAMILY Retrovirus zinc finger-like domains 951 977 IPR036875 GO:0003676|GO:0008270
Car01g00906 1136 Pfam NFACT N-terminal and middle domains 226 523 - -
Car01g00906 1136 Pfam NFACT N-terminal and middle domains 10 161 - -
Car01g00906 1136 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
Car01g00906 1136 MobiDBLite consensus disorder prediction 935 953 - -
Car01g00906 1136 MobiDBLite consensus disorder prediction 688 732 - -
Car01g00906 1136 MobiDBLite consensus disorder prediction 905 921 - -
Car01g00906 1136 Coils Coil 364 384 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00906 K24971 - gmx:100807437 1855.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00906 01 8192859 8203051 Car01g00906 01 8192859 8203051 ECH