Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00905 ATGGCCATGGCATCTGTGTCTCACCAACTCAGTGTCGTAAAGTGGACCCCACTTCTATGGAAACCAACACACTCACAGAAACAAAGGCGCGGTGTTCTTCCTATTGTCTGTTCCATTGCAATTTCAAGCGCTCAGAACAAAGAGAGAGCAAAGCTTAAAGAAATCTTCGAAGATGCTTATGAGAGGTGCCGCACTGCTCCAATGGAAGGTGTTGCGTTCACCCTTGACCAATTCACTGAAGCTCTTGAAAAGTATGATTTTGAGTCTGAAGTTGGAACTAAGGTTAGAGGCACTGTGTATGGCATGGATTCTAGTGGAGCTTTTGTTGACATTACCTCAAAGTCTACTGCTTACTTGCCGCTGCGAGAGGCATCCATCCGCAGAATTAAGCATGTAGAAGATGCAGGCCTAATTCCCGGCGTGAAAGAGGAATTTGTAATCATTGGTCAAAATGAAATTGATGATGGCTTGATCTTGAGCTTAAGATCTATTCAGTATGACCTTGCATGGGAAAGATGTCGGCAACTTCAGGCAGAAGATGCTGTTGTCAAGGGTAAGATTATTGATGCAAATAAAGGTGGTGTGGTGGCTGAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTCTCACAGATGTCAACGAAATCACCGGGAGAAGAGATTCTTGAGATGGAGATTCCTCTAAAGTTTGTGGAGGTGGACGAGGAACAGTCCAGGCTTATCCTTAGCCACCGCAAAGCCGTGGCCGGCATCCAAGGACAACTAGGAATTGGATCAGTTGTTGCAGGCACTGTGCAAAGTCTGAAACCATACGGTGCCTTTGTTGACATTGGTGGAATCAGTGGCCTTCTTCATGTCAGTCAAATCAGTCATGATCGTATATCTGATATTGCGACTGTTCTTCAACCTGGTGATATTCTGAAGGTTATGATCTTAAGTCATGATCGCGAGAGAGGCCGTGTAAGTCTTTCCACCAAGAAGTTGGAACCTACACCTGGTGACATGATTCGTAATCCAAAGCTTGTCTTCGAGAAGGCTGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCGCAAGCCGAAGCCATGGCTCGTGCTGATATGCTGAGGTTCCAGCCAGAGAGTGGATTAACTCTCAGCAGTGATGGGATCTTAGGACCACTTTCTTCAGATTTGCCTCCAGAGGGACTGGATCTGAGTGAGATACCACCAGCTGAAGATTAA 1221 0.4603 MAMASVSHQLSVVKWTPLLWKPTHSQKQRRGVLPIVCSIAISSAQNKERAKLKEIFEDAYERCRTAPMEGVAFTLDQFTEALEKYDFESEVGTKVRGTVYGMDSSGAFVDITSKSTAYLPLREASIRRIKHVEDAGLIPGVKEEFVIIGQNEIDDGLILSLRSIQYDLAWERCRQLQAEDAVVKGKIIDANKGGVVAEVEGLKGFVPFSQMSTKSPGEEILEMEIPLKFVEVDEEQSRLILSHRKAVAGIQGQLGIGSVVAGTVQSLKPYGAFVDIGGISGLLHVSQISHDRISDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLSSDLPPEGLDLSEIPPAED 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00905 406 SUPERFAMILY Nucleic acid-binding proteins 175 247 IPR012340 -
Car01g00905 406 ProSiteProfiles S1 domain profile. 180 244 IPR003029 GO:0003676
Car01g00905 406 ProSiteProfiles S1 domain profile. 92 162 IPR003029 GO:0003676
Car01g00905 406 SUPERFAMILY Nucleic acid-binding proteins 87 187 IPR012340 -
Car01g00905 406 ProSiteProfiles S1 domain profile. 257 325 IPR003029 GO:0003676
Car01g00905 406 Gene3D - 173 250 IPR012340 -
Car01g00905 406 Coils Coil 342 362 - -
Car01g00905 406 MobiDBLite consensus disorder prediction 379 406 - -
Car01g00905 406 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 32 406 - -
Car01g00905 406 CDD S1_RPS1_repeat_ec2_hs2 180 244 - -
Car01g00905 406 PRINTS Ribosomal protein S1 signature 92 110 IPR035104 -
Car01g00905 406 PRINTS Ribosomal protein S1 signature 110 124 IPR035104 -
Car01g00905 406 PRINTS Ribosomal protein S1 signature 183 199 IPR035104 -
Car01g00905 406 PRINTS Ribosomal protein S1 signature 228 248 IPR035104 -
Car01g00905 406 SMART S1_6 255 325 IPR022967 -
Car01g00905 406 SMART S1_6 178 244 IPR022967 -
Car01g00905 406 SMART S1_6 90 162 IPR022967 -
Car01g00905 406 Gene3D - 251 329 IPR012340 -
Car01g00905 406 Pfam S1 RNA binding domain 256 325 IPR003029 GO:0003676
Car01g00905 406 Pfam S1 RNA binding domain 178 244 IPR003029 GO:0003676
Car01g00905 406 CDD S1_RPS1_repeat_hs4 257 325 - -
Car01g00905 406 PANTHER 30S RIBOSOMAL PROTEIN S1 32 406 - -
Car01g00905 406 SUPERFAMILY Nucleic acid-binding proteins 256 335 IPR012340 -
Car01g00905 406 Gene3D - 74 172 IPR012340 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00905 K02945 - gmx:100806905 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00905 01 8188644 8192347 Car01g00905 01 8188644 8192347 ECH