Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car01g00212 | ATGGGTTCATTTTCTCTATTATGTGTGTTGGGCTTATCACTTATTATAATGGGTGACATTGCACATGCCCAAAACTCACCATCAGACTACGTTAAAGCACACAACATAGCAAGATTCAACGTTAGTACTTTGATTCAAATTCCCGATGTGGTTTGGGACAAAAGTGTTGCTGCTTTTGCACGTACCTATGCCAATCAACGTAAGGATTGTCAATTGAAGCACTCCGGTAATAACCGTTACGGCGAGAATATCGCAATAAGCACCGGCGACATGAGCGGCAAGGAGGCGGTGAAATTGTGGGCGGAAGAGAAACCACATTATGATTCATATCGTAACATATGTTTTGATGGTGAATGCAACCATTATACTCAAGTTGTTTGGAGAAAATCACTACGTATTGGATGTGCCAAAGTGAAATGTGATAATGGTGGCACTTTTGTTACTTGCAATTATTCTCCCCCTGGCAACCGTCCTGGCGAAATGCCATATTAA | 492 | 0.4167 | MGSFSLLCVLGLSLIIMGDIAHAQNSPSDYVKAHNIARFNVSTLIQIPDVVWDKSVAAFARTYANQRKDCQLKHSGNNRYGENIAISTGDMSGKEAVKLWAEEKPHYDSYRNICFDGECNHYTQVVWRKSLRIGCAKVKCDNGGTFVTCNYSPPGNRPGEMPY | 163 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car01g00212 | 163 | PANTHER | PATHOGENESIS-RELATED PROTEIN 1B-LIKE | 7 | 163 | - | - | |
| Car01g00212 | 163 | Pfam | Cysteine-rich secretory protein family | 33 | 151 | IPR014044 | - | |
| Car01g00212 | 163 | CDD | CAP_PR-1 | 27 | 163 | - | - | |
| Car01g00212 | 163 | SMART | SCP_3 | 25 | 159 | IPR014044 | - | |
| Car01g00212 | 163 | PRINTS | Venom allergen 5 signature | 50 | 68 | IPR002413 | - | |
| Car01g00212 | 163 | PRINTS | Venom allergen 5 signature | 118 | 137 | IPR002413 | - | |
| Car01g00212 | 163 | PRINTS | Allergen V5/Tpx-1 family signature | 50 | 68 | IPR001283 | - | |
| Car01g00212 | 163 | PRINTS | Allergen V5/Tpx-1 family signature | 96 | 109 | IPR001283 | - | |
| Car01g00212 | 163 | PRINTS | Allergen V5/Tpx-1 family signature | 119 | 135 | IPR001283 | - | |
| Car01g00212 | 163 | PRINTS | Allergen V5/Tpx-1 family signature | 146 | 159 | IPR001283 | - | |
| Car01g00212 | 163 | SUPERFAMILY | PR-1-like | 21 | 163 | IPR035940 | - | |
| Car01g00212 | 163 | PANTHER | CYSTEINE-RICH SECRETORY PROTEIN-RELATED | 7 | 163 | IPR001283 | - | |
| Car01g00212 | 163 | Gene3D | CAP | 20 | 163 | IPR035940 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car01g00212 | Car-Chr1 | 1625961 | 1626452 | Dispersed/Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car01g00212 | K13449 | - | gmx:100805116 | 209.92 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Car01g00212 | 01 | 1625961 | 1626452 | Car01g00212 | 01 | 1625961 | 1626452 | ECH |