Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g02338 ATGGCGGGTGAAGGAGAGTTCGAGCACGAGGTGGAAGAAGAGTTCGgggtttggaagaaaaatacCCCATTCTTGTACGACTTGATCATTTCTCACCCTCTGCAATGGCCTTCACTCACCGTCCATTGGGTCCCTTCGTCACCAGAATCTCACGCTCATCCATCCTTCAACGTTCACAAGCTCATCCTCGGCACTCATACTTCCAACGATTCCCCCAATTTTCTGATGTTTGCCGATGCTGTGCTCCCTGTCAATACATCGGAATCCATCACTGACGCCAACCCTGAGATTCCGGCAATTCCTAAGataGAGATTACGCATAAGATAGAGGTTGATGGGGAGGTTAATCGAGCACGCTGTATGCCGCAAAACCCACGGATTATTGGCGCTAAGACTACTAGTTCTGAGGTTTTTGTGTTTGATAGTGCCAAACAACTAGGGAAGCTACAAGGGCCAGGCTGTGATCCTGATTTGAGGTTGAGGGGTCATGATAAAGAAGGGTATGGTTTGTCTTGGAGCCCCTTGAAGGAGGGCCACCTTTTGAGTGGTTCAATGGACTATAAGATTTGCTTGTGGAATATATCAGCTGCAGCTCAAGAGAAAGTACTTGATGCAGTTCACATTTATGAGGCTCATCAAAACTTGGTTAATGACGTATCTTGGCATTTGAAGAATGAGAGTTTGTTTGGATCAGTTGGAGATGACTGTCAATTGATAATTTGGGACTTGCGGACAAACCTGGCCCAACAATCTGTCAAAGCTCATGAGAGGGAGgtgaattttctttctttcaatccATATAACGAATGGATTTTGGCTACAGCATCCTCAGACACTACTGTCAGCCTCTTTGATATGCGGAAGCTAACGGTGCCGTTGCATGTTCTAAGTAGCCACACAGATGAGGTATTCCAGGTAGAATGGGATCCGAATCATGAGACAGTATTGGCGTCTTCTGGTGCTGATAGAAGGCTGATGGTTTGGGACCTCAACAGGGTTGGGGATGAACAGTTAGAGGGAGATGGTGACGACGGCCCTCCTGagcttctcttctctcatGGGGGTCACAAAGGGAAGATATCAGATTTTTCATGGAACAAGAATCTGCCATGGGTTATCTCAAGTGTGGCCGAGGACAATTTCTTCCAGGTCTGGCAAATGGCCGATAGCATTTACCATGAcggtgatgatgatgaagtgTGGTCTGCCGATGACCATCACTA 1223 0.4432 MAGEGEFEHEVEEEFGVWKKNTPFLYDLIISHPLQWPSLTVHWVPSSPESHAHPSFNVHKLILGTHTSNDSPNFLMFADAVLPVNTSESITDANPEIPAIPKIEITHKIEVDGEVNRARCMPQNPRIIGAKTTSSEVFVFDSAKQLGKLQGPGCDPDLRLRGHDKEGYGLSWSPLKEGHLLSGSMDYKICLWNISAAAQEKVLDAVHIYEAHQNLVNDVSWHLKNESLFGSVGDDCQLIIWDLRTNLAQQSVKAHEREVNFLSFNPYNEWILATASSDTTVSLFDMRKLTVPLHVLSSHTDEVFQVEWDPNHETVLASSGADRRLMVWDLNRVGDEQLEGDGDDGPPELLFSHGGHKGKISDFSWNKNLPWVISSVAEDNFFQVWQMADSIYHDGDDDEVWSADDHH 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g02338 407 Gene3D - 4 403 IPR015943 GO:0005515
Bva14g02338 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 296 331 IPR001680 GO:0005515
Bva14g02338 407 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI2-RELATED 6 401 - -
Bva14g02338 407 SUPERFAMILY WD40 repeat-like 106 390 IPR036322 GO:0005515
Bva14g02338 407 PRINTS G protein beta WD-40 repeat signature 272 286 IPR020472 -
Bva14g02338 407 PRINTS G protein beta WD-40 repeat signature 316 330 IPR020472 -
Bva14g02338 407 PRINTS G protein beta WD-40 repeat signature 180 194 IPR020472 -
Bva14g02338 407 PANTHER WD40 REPEAT FAMILY 6 401 - -
Bva14g02338 407 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 296 331 - -
Bva14g02338 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 251 IPR001680 GO:0005515
Bva14g02338 407 SMART WD40_4 202 242 IPR001680 GO:0005515
Bva14g02338 407 SMART WD40_4 346 386 IPR001680 GO:0005515
Bva14g02338 407 SMART WD40_4 245 285 IPR001680 GO:0005515
Bva14g02338 407 SMART WD40_4 153 193 IPR001680 GO:0005515
Bva14g02338 407 SMART WD40_4 289 329 IPR001680 GO:0005515
Bva14g02338 407 Pfam WD domain, G-beta repeat 206 242 IPR001680 GO:0005515
Bva14g02338 407 Pfam WD domain, G-beta repeat 350 385 IPR001680 GO:0005515
Bva14g02338 407 Pfam WD domain, G-beta repeat 292 329 IPR001680 GO:0005515
Bva14g02338 407 Pfam WD domain, G-beta repeat 249 285 IPR001680 GO:0005515
Bva14g02338 407 ProSitePatterns Trp-Asp (WD) repeats signature. 180 194 IPR019775 -
Bva14g02338 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 160 202 IPR001680 GO:0005515
Bva14g02338 407 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 13 83 IPR022052 -
Bva14g02338 407 ProSitePatterns Trp-Asp (WD) repeats signature. 316 330 IPR019775 -
Bva14g02338 407 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 287 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g02338 Bva-Chr14 20171591 20175079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g02338 209 394 Miscellaneous Gene Families AT5G08390 21.925 6.58e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g02338 K10752 - gmx:100791834 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva14g02338 14 20171591 20175079 Bva14g02338 14 20171591 20175079 ECH