LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva14g02277	ATGCCGGCCTTGGCTTGTTGCGTGGATGCTGCAGTTACTCCTCCCGGCTACGCTTTTGCTGGGGACAGCTCTCTTCTTGCGCCGGTAACATTTTCCGGCGTACCTTCGGCGACAACCAACTCCTCCACAACCGCAAACATCGTCGACGTTGCGGTTGATAATTCGCATTGGTCGCCTTCGCAGTCTGCTGCTCTATATAAGATCGATGGATGGGGCGCTCCGTACTTCTGTGTTAATTCCTCTGGGAATATTTCGGTACGCCCATATGGCCCAGAGACCCTGCCTCACCAGGAGATTGATTTGCTGAAGATTGTGAAGAAAGTCTCGGATCCGAAATCTTCTGGCGGACTCGGGTTGCAGCTTCCTCTCATTGTTCGACTACCGGACGTGCTCAAGAACCGGCTTGAATCCCTTCAATCAGCATTCGAATGTGCAATCCAATCTCAGGGATATGAGTCTCATTATCAAGGCGTTTATCCTGTTAAATGCAACCAAGACAGGTTCGTTGTGGAGGACATAGTTAAATTCGGATCACCATTCCGGTTCGGACTAGAGGCTGGGTCGAAGCCCGAGCTTCTTCTGGCTATGAGCTGTTTGTGCAGGGGAAACCCAGAATCCCTCCTGGTTTGCAATGGATTTAAAGATGGCGAATACATTTCTTTGGCTTTGGTTGCGAGGAAGCTCGCATTGAATACCGTGATCGTTCTTGAGCAAGAAgaagaacttgatttggtgaTTGAATTGAGTAAGAAGCTCTGCATTCGGCCTGTGATAGGCGTTCGAGCTAAGCTGCGGACGAAGCATTCTGGGCATTTTGGGTCAACTTCAGGTGAGAAAGGGAAGTTTGGGCTGACCACAACTCAGATTTTGAAAGTTGTGAGGAAGCTGGAGCAAGTTGGTATGCTTGATTGCCTTCAATTGTTGCATTTCCATATTGGGTCTCAAATCCCTTCGACTGCATTGCTTGCGGATGGTGTGGGAGAGGCTGCACAAATCTACTGCGAATTGATTCGACTGGGCGCTCATATGCAAGTTATCGACATTGGAGGAGGACTGGGTATTGATTATGATGGTTCAAAGTCTACTGATTCTGATATTTCTATTGGGTATACTCTTCAAGAGTATGCAGCAGCGGTTGTTCAAGCAGTTCGATATGTCTGCGACCGGAAATCTACCAAGCACCCTGTAATTTGCAGTGAAAGTGGCCGAGCTATTGTGTCTCATCATTCAGTTCTGATCTTCGAGGCAGTTTCTACTAGTGCATACGAGGTCCCTGCATTGTCTCCACTTTCTCTGCAGTACTTGGTTGAGGGCCTCCCAGATGATGCTCGTGCCGATTATAATAGTCTATCTGCTGCAGCCATTAGAGGTGAGCATGATACCTGCTTGCTCTATACTGATCAATTGAAGCAACGATGTGTTGAACAATTCAAGCAAGGGTCTGTGGGTATTGAGCAACTTGCCGCTGTAGATGCTTTGTGTGATTTGGTCAGTAAGGCAATTGGGGCAGCGGATCCAGTTCGAACATACCACGTCAATCTCTCTGTATTCACTTCCATTCCTGATTTATGGGGTATTGGGCAGCTATTTCCCATAGTCCCCATTCATCGTCTGGATGAGCGTCCCTCAATAAGGGGAATTCTGTCTGATTTGACCTGTGATAGTGATGGGAAGGTCGACAAATTCATCGGCGGTGAAACCAGCTTGCCGCTCCATGAACTACAGGGCGGAGGAAGCGGTGGTGGAAAGTACTATCTGGGAATGTTCTTGGGTGGGGCTTACGAGGAGGCGCTTGGTGGAGTTCACAATCTGTTTGGTGGCCCGACTGTGGTTCGGGTGTCGCAGAGCGATGGCCCGCATAGCTTCGCGGTGACGCGTGCAGTGCCTGGGCCATCTTGTGGGGATGTCCTCCGAGCGATGCAGCATGAGCCCGAGCTCATGTTTGACACCCTCAAGCACCGTGCAGAAGAGTTTATACATCAGCATCACGAGGACGATGACGGTGTGCTGAGTGCCGCGGCGCTGGCCGGTGCCCTGGCCCGCTCCTTTAACAATATGCCTTATCTTGTCTCAGCCTCGTCTTGTTGCTTGACTGCCATTAACAATAATGGTTTTTATTACTGTGGTGGTGATGATTTCCATGCCGTCGCTGCTGATTCTGCATCCGGAGAAGATGAGCAGTGGTCTTATTGCTGTGCTTG	2201	0.4934	MPALACCVDAAVTPPGYAFAGDSSLLAPVTFSGVPSATTNSSTTANIVDVAVDNSHWSPSQSAALYKIDGWGAPYFCVNSSGNISVRPYGPETLPHQEIDLLKIVKKVSDPKSSGGLGLQLPLIVRLPDVLKNRLESLQSAFECAIQSQGYESHYQGVYPVKCNQDRFVVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCRGNPESLLVCNGFKDGEYISLALVARKLALNTVIVLEQEEELDLVIELSKKLCIRPVIGVRAKLRTKHSGHFGSTSGEKGKFGLTTTQILKVVRKLEQVGMLDCLQLLHFHIGSQIPSTALLADGVGEAAQIYCELIRLGAHMQVIDIGGGLGIDYDGSKSTDSDISIGYTLQEYAAAVVQAVRYVCDRKSTKHPVICSESGRAIVSHHSVLIFEAVSTSAYEVPALSPLSLQYLVEGLPDDARADYNSLSAAAIRGEHDTCLLYTDQLKQRCVEQFKQGSVGIEQLAAVDALCDLVSKAIGAADPVRTYHVNLSVFTSIPDLWGIGQLFPIVPIHRLDERPSIRGILSDLTCDSDGKVDKFIGGETSLPLHELQGGGSGGGKYYLGMFLGGAYEEALGGVHNLFGGPTVVRVSQSDGPHSFAVTRAVPGPSCGDVLRAMQHEPELMFDTLKHRAEEFIHQHHEDDDGVLSAAALAGALARSFNNMPYLVSASSCCLTAINNNGFYYCGGDDFHAVAADSASGEDEQWSYCCA	733

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bva14g02277	733	PRINTS	Arginine decarboxylase signature	151	165	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva14g02277	733	PRINTS	Arginine decarboxylase signature	387	404	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva14g02277	733	PRINTS	Arginine decarboxylase signature	538	563	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva14g02277	733	PRINTS	Arginine decarboxylase signature	209	224	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva14g02277	733	PRINTS	Arginine decarboxylase signature	513	534	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva14g02277	733	PRINTS	Arginine decarboxylase signature	235	256	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva14g02277	733	PRINTS	Arginine decarboxylase signature	259	281	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva14g02277	733	PRINTS	Arginine decarboxylase signature	127	142	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva14g02277	733	PRINTS	Arginine decarboxylase signature	592	613	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva14g02277	733	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	397	416	IPR000183	GO:0003824
Bva14g02277	733	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	302	315	IPR000183	GO:0003824
Bva14g02277	733	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	183	195	IPR000183	GO:0003824
Bva14g02277	733	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	159	177	IPR000183	GO:0003824
Bva14g02277	733	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	592	605	IPR000183	GO:0003824
Bva14g02277	733	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.	159	177	IPR022653	-
Bva14g02277	733	Gene3D	Lyase, Ornithine Decarboxylase; Chain A, domain 1	66	615	IPR009006	GO:0003824
Bva14g02277	733	Gene3D	-	426	506	-	-
Bva14g02277	733	PANTHER	ARGININE DECARBOXYLASE	1	733	-	-
Bva14g02277	733	CDD	PLPDE_III_ADC	118	613	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva14g02277	733	PIRSF	ARGDC	37	691	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva14g02277	733	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 signature 2.	340	353	IPR022657	-
Bva14g02277	733	Gene3D	Alanine racemase	128	409	IPR029066	-
Bva14g02277	733	PANTHER	ARGININE DECARBOXYLASE	1	733	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva14g02277	733	TIGRFAM	speA: arginine decarboxylase	57	689	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Bva14g02277	733	Pfam	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	152	407	IPR022644	GO:0003824
Bva14g02277	733	SUPERFAMILY	PLP-binding barrel	128	409	IPR029066	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva14g02277	Bva-Chr14	19610678	19613658	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva14g02277	K01583		-	zju:107426702	1162.9

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva14g02277	14	19610678	19613658	Bva14g02277	14	19610678	19613658	ECH