Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g01167 ATGGTTAACATGACAAAGGCCATTATTTTTCTCTGGGGCATTGCTCTTCTTTTTTGCAGCATAATAAATGTTTCTCGTTCCCTCCCTGCGCCTGGGAATGATGTTAAAGTCATCGATGTAAGAAAATACTATCACAAACCTACGCAGGAAGAAATAGAATATGATGATGAATATGTTCCTGGCAGCTACCATGATGCATTTGCGGAGGCATGGGATGTAGCATGCAGAAAAACTACCGGTCCTGTAAAGATTTTAGTCCCAAAGGGAAAATTCCTTCTTCCCCCAATAATGTTTAGTGGACCATGCATAAGTGCAAAGCCCATCGTTTTTGAAGTTGAGGGGACTATCATAGCTCCAACCAATCCTTCTCTTTATCCAAATGCTGAATGGATCACCTTTGCAGATCTTGATAGCTTGGTGCTGAATGGTAATGGAGTTTTCGATGGCCAAGGAGGAGTAGTTGACCCCGAAACAAAAGCGTCTGCATGGGGCGTAAATGACTGCAAGACAAACAAAAACTGTGTACCACCGTCGTCTAATTTGAGATTCGAAAGAGTGCAAAACTCTATCGTGACAGGGATTACTTCCTTGAATAGCAAATGGTTCCACTACCACGTTTTCATGTGCAATAACTTCACAGCCACTGATCTCCATATAATTGCACCTAAAGACAGTCCCAACACAGATGGAATGCATCTCAGTGAAAGCACTTTGGTGAATGTGGCCAACACAGTCATTGAAACTGGAGatgattgcatttccatcgGCCAAGGCTGCACCAATGTTAATATCCACAACGTTATTTGTGGTCCAGGCCATGGCATCAGCGTTGGAAGCCTTGGTAAGGAACGCACTGACAAAAGTGTGGTGGGAGTCACTGTCACTGACTGCACATTCATTAACACGACAAATGGTGCCAGAATCAAAACCTGGATTGGAAAGGGCCATGGGGAAGCAAAGAACATTATCTTTGACAACCTTATCATGAACAATGTTAAGAATCCCGTTGTCATTGATCAAAGTTATGgttccaagaaaaaaagagcgCCATCAACTTCATTGTGGAAGATTAGCGACACTCATTTCAGGAGAATAAGAGGAACAACAACCTCCAGCGTTGCCGTGTCTTTACAGTGCAGTTCTAAGAATCCATGCGAAGGCGTCGAAGTGAGTGACATTGATTTGACTTACGTTGGCCCTTCAAAAACAGTAGCACTTACATCATCATGCGCCAATGCAATGGCTAAGTTTGGGGGCAAGCTCACCACAGGAGCTTGTCAATG 1283 0.4232 MVNMTKAIIFLWGIALLFCSIINVSRSLPAPGNDVKVIDVRKYYHKPTQEEIEYDDEYVPGSYHDAFAEAWDVACRKTTGPVKILVPKGKFLLPPIMFSGPCISAKPIVFEVEGTIIAPTNPSLYPNAEWITFADLDSLVLNGNGVFDGQGGVVDPETKASAWGVNDCKTNKNCVPPSSNLRFERVQNSIVTGITSLNSKWFHYHVFMCNNFTATDLHIIAPKDSPNTDGMHLSESTLVNVANTVIETGDDCISIGQGCTNVNIHNVICGPGHGISVGSLGKERTDKSVVGVTVTDCTFINTTNGARIKTWIGKGHGEAKNIIFDNLIMNNVKNPVVIDQSYGSKKKRAPSTSLWKISDTHFRRIRGTTTSSVAVSLQCSSKNPCEGVEVSDIDLTYVGPSKTVALTSSCANAMAKFGGKLTTGACQ 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g01167 427 Pfam Glycosyl hydrolases family 28 79 412 IPR000743 GO:0004650|GO:0005975
Bva14g01167 427 SMART pbh1 318 340 IPR006626 -
Bva14g01167 427 SMART pbh1 236 257 IPR006626 -
Bva14g01167 427 SMART pbh1 259 279 IPR006626 -
Bva14g01167 427 SMART pbh1 209 235 IPR006626 -
Bva14g01167 427 SMART pbh1 289 310 IPR006626 -
Bva14g01167 427 PANTHER POLYGALACTURONASE 4 425 - -
Bva14g01167 427 Gene3D - 34 423 IPR012334 -
Bva14g01167 427 PANTHER - 4 425 - -
Bva14g01167 427 SUPERFAMILY Pectin lyase-like 65 423 IPR011050 -
Bva14g01167 427 ProSitePatterns Polygalacturonase active site. 266 279 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g01167 Bva-Chr14 5676957 5679167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva14g01167 66 426 Glycoside Hydrolase AT1G02790 42.935 1.88e-93 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g01167 K01213 - gmx:100802357 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva14g01167 14 5676957 5679167 Bva14g01167 14 5676957 5679167 ECH