Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g00346 atggcacATGCACTACCGGAGGAGAAGATCCGCGAGAACCCAGAAAAGGATACCAAAGAAACACCCAATGCTTCCTTCAAATTCAATGCCCAAGCACCTGAATTTGTCCCAAGATCGCAGACCCAGATGCCCATATCGGGTTATTTCTATCCCTGCTTCCAGATTCTTGGTGGTGCTGGTGCTTCTGATTGGTTTTACGTTAGCGACCAGGACCCCGCTTGTATAATCCCCGGTACCAATGTGGCACTTCCCAATTGCTCCAAGAATATACTCACTCACGATCTTCAGCAAAAGATCGTCAAACAGGTGGAGTATCAGTTCAGTGACATGAGTTTACTAGCAAATGAATCTTTTCTGAGACAGGTGAATAAAGATCCTGAAGGATATGTTCCAATATCGGTTATAGCTTCTACCAAAAAGATCAAGGCCCTCATTGGTAACATACATTTGCTTACTCAAGCAATCCGTTCATCATCGAAACTTGTTTTAAGTACCGATGGAAAGAAGGTGAAACGTAAACACCCTTTCACtgagaaggagaaagaggatttgCAGTCTCGTACTGTTGTGGCTGAGAATTTACCTGAAGATCACTCCTATCAAAATCTGCAGAAAATTTTCGGTGTAGTTGGAAGCGTGAAAACAATAAGAATATGCCATCCCCAGGAATCTAATTCCCCCCGCCCTAAAAGTGATTTCTTCATCAGTAACAAGATCCATGCACTCGTGGAGTATGAGACAACGGACATAGCTGAGAAAGCTGTTGACAAGCTAAATGATGAAAGGAATTGGAGGAAAGGGATGCGAGTGAGGCTGCTGCTTAGACGCTCGCCAAAATCTGTTTTGAAGAGTAGAAAGTCCGAATTTGATGGCTTTATCGATGATAATGAGATTCTAAATTCTGATTCTGCTGAGGATTCTTCTCATACAAACAACACAGATTTGAATGCTGAGACCAATGTTGAAGAAAATGCAACGGGCTCTAAGAAAGGATGGGCCAGAGGACGTGGTAAGGGGAGAGGATGTGTTCAAAGCCACGGTGGACGTGGCTTGCTTGCTCCACCTTCTCAACCAAGCAGCATTGTCCTATCCGAAGCATCTGTCAATGTGAAGCAAAACTCCAAGGGCCCAAGAATGCCAGATGGGACCAGAGGTTTCACCATGGGACGGGGCAAGCCAGTTAATTCTCTTGTTTTACCTCAGGAGTA 1208 0.4346 MAHALPEEKIRENPEKDTKETPNASFKFNAQAPEFVPRSQTQMPISGYFYPCFQILGGAGASDWFYVSDQDPACIIPGTNVALPNCSKNILTHDLQQKIVKQVEYQFSDMSLLANESFLRQVNKDPEGYVPISVIASTKKIKALIGNIHLLTQAIRSSSKLVLSTDGKKVKRKHPFTEKEKEDLQSRTVVAENLPEDHSYQNLQKIFGVVGSVKTIRICHPQESNSPRPKSDFFISNKIHALVEYETTDIAEKAVDKLNDERNWRKGMRVRLLLRRSPKSVLKSRKSEFDGFIDDNEILNSDSAEDSSHTNNTDLNAETNVEENATGSKKGWARGRGKGRGCVQSHGGRGLLAPPSQPSSIVLSEASVNVKQNSKGPRMPDGTRGFTMGRGKPVNSLVLPQE 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g00346 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 277 IPR000504 GO:0003723
Bva14g00346 402 CDD RRM_La_like_plant 187 274 IPR034878 GO:0003723
Bva14g00346 402 Pfam Ataxin-2 C-terminal region 25 40 IPR009818 -
Bva14g00346 402 ProSiteProfiles La-type HTH domain profile. 89 180 IPR006630 -
Bva14g00346 402 MobiDBLite consensus disorder prediction 1 23 - -
Bva14g00346 402 Gene3D - 92 178 IPR036388 -
Bva14g00346 402 PRINTS Lupus La protein signature 159 172 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bva14g00346 402 PRINTS Lupus La protein signature 102 119 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bva14g00346 402 PRINTS Lupus La protein signature 181 197 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bva14g00346 402 PRINTS Lupus La protein signature 237 255 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bva14g00346 402 PRINTS Lupus La protein signature 128 143 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bva14g00346 402 SUPERFAMILY RNA-binding domain, RBD 172 280 IPR035979 GO:0003676
Bva14g00346 402 Pfam La domain 99 156 IPR006630 -
Bva14g00346 402 SMART la 93 173 IPR006630 -
Bva14g00346 402 MobiDBLite consensus disorder prediction 298 402 - -
Bva14g00346 402 PANTHER LUPUS LA PROTEIN-RELATED 16 395 IPR045180 -
Bva14g00346 402 SUPERFAMILY "Winged helix" DNA-binding domain 90 181 IPR036390 -
Bva14g00346 402 Gene3D - 179 281 IPR012677 -
Bva14g00346 402 MobiDBLite consensus disorder prediction 1 22 - -
Bva14g00346 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 260 IPR000504 GO:0003723
Bva14g00346 402 MobiDBLite consensus disorder prediction 357 376 - -
Bva14g00346 402 PANTHER LA-RELATED PROTEIN 6C 16 395 - -
Bva14g00346 402 SMART rrm1_1 188 273 IPR000504 GO:0003723
Bva14g00346 402 MobiDBLite consensus disorder prediction 303 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g00346 Bva-Chr14 1717417 1720384 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g00346 K15191 - gmx:100796786 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva14g00346 14 1717417 1720384 Bva14g00346 14 1717417 1720384 ECH