Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva14g00320 | ATGATAAGCATGTTAGTAGAGAGAAGCAAGCGATCGCGTGCCAAATTCGGAGCTCTATTGCGTTCCGATCCGACGTCGCTTTACACCATCAACCGTGAAGAAGATGATTTATATCAACGCAGACAAAGCAACGCGTCCGCTGCTAGCCCACAATACTACGGCGGAGCCAATAGCGCATCCACCAGCAACAGTGCCTCTCCGTACTATATGTCTCCGTGGAACCCACCCGTCTCTCCCTACACCAAATCTCCATGGCAACTCTCCTCGCCTCTAAACTTCAATGCCTTCCACTTCCAAGAAGAAAGCTCGCCTCTAAATGGCCTCGTTGGGTCACTCGTACGCGAAGAGGGACACGTGTACTCTTTGGCGGTTTCTGACGATTTGTTATATACCGGTTCCGATAGTAAGAACATTCGGGTCTGGAAGAATCTCAAAGAGTACGCGGGTTTCAAATCTGGTAGCGGCTTGGTTAAAGCCATAGTTATTTCCGGGGACAAAATCTTCACCGGTCACCAAGATGGAAAAATTAGAGTATGGAAGATTTCCACCAAAGGTAATCACAAACGCATCGGAAGCTTACCCACCATCAAAGATTACGTTAAAAGCTCAATGAACCCAAAGAACTACGTCCAAGTCCGACGACACAAAAACGCTGTCAGAATCAAGCATTTCGACGCCGTTTCGTGCTTGAGCTTGGACCAAGAGCAAGGGTTGTTATATTCAGGTTCTTGGGACAAATCGTTCAAGGTTTGGCGCATATCAGATTCTGCATGCTTGGAATCCGTCGACGCCCACGTCGACGCTGTTAACGCCGTGGTGGCCGGATTCGGATGTTTCGCGTTCACGGGCTCTGCAGACGGGACGGTGAAGATGTGGAGAAGAGTATCCGCGTCGGGGAAAGGAAAAACGAAGCACGTGTTAGAACGGGTTCTGTTAAATCAGGAAAACGCGGTAACGGCTTTGGCAGCGAACGCTTCCAACACCTTTATCTATTGCGGGTCTTCGGACGGGTTGGTGAACTTGTGGGAACTCGACCCGAAAAGTAACCAGCTGTCCCACGGTGGGGTCTTGAGAGGGCATAGACTCGCGGTGCTATGCTTGGCCGTTGCGGGGAACCTGGTCTTTAGTGGCTCGGCAGACAGGAGCGTTTGCGTGTGGAGGCAGGAAGAGAGCGGAGCACACACGTGGCTTTCGGTTCTGACGGGCCACACCGGGCCCGTTAAGTGCCTCGCCGTTGAAAAAGAAGGTGTATCAGCAGCTGCCGCCAAAGATCAAGACGATCACGATCGTTCAAAGGGGGATCAACGGTGGATAGTGTACACTGGCAGCTTAGACAAGTCCGTAAAGGTGTGGCGCGTGTCGGAAAACGCACAGGATCTAAGCATGATCCATGGGAATCGATGCGCGCCCTACGATTCGTCAGTGGGGGGAGCCAATCTTTGTCCATCCCCCATCAACAACTATCCTCAGAGAAAAAATGGATTAAGCAGTTTGAAGAATAGATA | 1505 | 0.5103 | MISMLVERSKRSRAKFGALLRSDPTSLYTINREEDDLYQRRQSNASAASPQYYGGANSASTSNSASPYYMSPWNPPVSPYTKSPWQLSSPLNFNAFHFQEESSPLNGLVGSLVREEGHVYSLAVSDDLLYTGSDSKNIRVWKNLKEYAGFKSGSGLVKAIVISGDKIFTGHQDGKIRVWKISTKGNHKRIGSLPTIKDYVKSSMNPKNYVQVRRHKNAVRIKHFDAVSCLSLDQEQGLLYSGSWDKSFKVWRISDSACLESVDAHVDAVNAVVAGFGCFAFTGSADGTVKMWRRVSASGKGKTKHVLERVLLNQENAVTALAANASNTFIYCGSSDGLVNLWELDPKSNQLSHGGVLRGHRLAVLCLAVAGNLVFSGSADRSVCVWRQEESGAHTWLSVLTGHTGPVKCLAVEKEGVSAAAAKDQDDHDRSKGDQRWIVYTGSLDKSVKVWRVSENAQDLSMIHGNRCAPYDSSVGGANLCPSPINNYPQRKNGLSSLKNR | 501 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva14g00320 | 501 | SMART | WD40_4 | 105 | 142 | IPR001680 | GO:0005515 | |
| Bva14g00320 | 501 | SMART | WD40_4 | 304 | 343 | IPR001680 | GO:0005515 | |
| Bva14g00320 | 501 | SMART | WD40_4 | 255 | 293 | IPR001680 | GO:0005515 | |
| Bva14g00320 | 501 | SMART | WD40_4 | 214 | 252 | IPR001680 | GO:0005515 | |
| Bva14g00320 | 501 | SMART | WD40_4 | 393 | 452 | IPR001680 | GO:0005515 | |
| Bva14g00320 | 501 | SMART | WD40_4 | 350 | 387 | IPR001680 | GO:0005515 | |
| Bva14g00320 | 501 | SMART | WD40_4 | 143 | 180 | IPR001680 | GO:0005515 | |
| Bva14g00320 | 501 | PANTHER | F-BOX AND WD40 DOMAIN PROTEIN | 8 | 464 | IPR045182 | - | |
| Bva14g00320 | 501 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 311 | 352 | IPR001680 | GO:0005515 | |
| Bva14g00320 | 501 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 357 | 386 | IPR001680 | GO:0005515 | |
| Bva14g00320 | 501 | SUPERFAMILY | WD40 repeat-like | 112 | 461 | IPR036322 | GO:0005515 | |
| Bva14g00320 | 501 | Gene3D | - | 210 | 301 | IPR015943 | GO:0005515 | |
| Bva14g00320 | 501 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 311 | 345 | - | - | |
| Bva14g00320 | 501 | CDD | WD40 | 116 | 452 | - | - | |
| Bva14g00320 | 501 | Gene3D | - | 306 | 495 | IPR015943 | GO:0005515 | |
| Bva14g00320 | 501 | Pfam | WD domain, G-beta repeat | 223 | 251 | IPR001680 | GO:0005515 | |
| Bva14g00320 | 501 | Pfam | WD domain, G-beta repeat | 258 | 292 | IPR001680 | GO:0005515 | |
| Bva14g00320 | 501 | Pfam | WD domain, G-beta repeat | 355 | 386 | IPR001680 | GO:0005515 | |
| Bva14g00320 | 501 | Pfam | WD domain, G-beta repeat | 397 | 451 | IPR001680 | GO:0005515 | |
| Bva14g00320 | 501 | Pfam | WD domain, G-beta repeat | 116 | 142 | IPR001680 | GO:0005515 | |
| Bva14g00320 | 501 | Pfam | WD domain, G-beta repeat | 143 | 180 | IPR001680 | GO:0005515 | |
| Bva14g00320 | 501 | Pfam | WD domain, G-beta repeat | 314 | 342 | IPR001680 | GO:0005515 | |
| Bva14g00320 | 501 | PANTHER | EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE | 8 | 464 | - | - | |
| Bva14g00320 | 501 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 220 | 261 | IPR001680 | GO:0005515 | |
| Bva14g00320 | 501 | Gene3D | - | 88 | 209 | IPR015943 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva14g00320 | Bva-Chr14 | 1610246 | 1612535 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva14g00320 | 213 | 451 | Miscellaneous Gene Families | AT5G08390 | 24.793 | 1.18e-08 | 55.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva14g00320 | - | - | gmx:100807706 | 583.948 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Bva14g00320 | 14 | 1610246 | 1612535 | Bva14g00320 | 14 | 1610246 | 1612535 | ECH |