Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva14g00302 ATGGCGATCTGTCCTCACTTTTGCCGTGTCCCTACTGCTCGTACCGACATCTCCTTACCGGAGAACCTCTGGAAAATTGGACATCTTAGGTTCCGGAAAACCTTATCCGTCCGATGTTCGGGCGATTCTTCGTCGTCTTCGGTGGCAACGGACTCCGATTTTGATGCCAAGGTGTTCCGAAAGAATTTGACTAGGGGTAAGAATTATAACCGGAAGGGGTTTGGACATAAGGAGGAGACACTCGAGCTCATGAATCGCGAGTATACCAGTGACATCATCAAGactttgaaggaaaatggatATGAGTATACATGGGGAAACGTCACTGTGAAGCTAGCTGAAGCCTATGGCTTCTGCTGGGGCGTTGAAAGGGCTGTTCAAATTGCCTATGAAGCGAGGAAACAGTTTCCTACTGAGAGGATTTGGCTTACCAatgaaataattcataatcCAACTGTTAACCAGCGGCTAGAGGAGATGAACGTTCAGAATATTCCTCTTGATCAAGGAGAAAAGCAATTTGAGGTTGTCGACAAGGGTGATGTTGTGATTTTGCCTGCTTTTGGAGCTGCAGTGGATGAAATGCTGACTTTAAGTGAGAAAAATGTACAAATTGTTGATACAACTTGTCCATGGGTTTCAAAGGTCTGGAATGTTGTCGAGAAGCACAAGAAAGGAGATTATACTTCAGTAATTCATGGTAAATATGCCCATGAGGAAACCGTGGCAACTGCATCTTTTGCTGGAACACATGTCATTGTGAAGAATATGGCAGAGGCTGAATATGTTTGTGATTATATTCTCGGTGGTGAATATAATGGATCCAGCTCGACAAAAGAAGCGTTTTTAGAGaaattcaaatttgcaGTTTCTGAGGGTTTCGACCCTGATAGAGACCTAATAAAAGTAGGTATCGCAAATCAGACGACAATGCTCAAGGGAGAGACTGAAGAAATTGGGAAACTACTGGAGAAGACTATGATGCGCAAGTATGGGGTAGAAAATGTCAACGATCACTTCATGAGCTTTAATACAATTTGTGATGCAACTCAGGAGCGACAAGATGCTATGTACAAGCTTGTTGAGGAAGATTTGGATCTTATATTAGTAATTGGTGGCTGGAACTCGAGCAATACTTCACATCTGCAAGAGATAGCTGAGGAACGTGGAATTCCTTCTTACTGGATTGACAGTGAAAAAAGGATTGGTCCAGGAAACAGAATAGCATATAAGCTGAACCATGGTGAGCTTGTggagaaagaaaactttttaCCGGAGGGTCCAATAACAATTGGTGTAACATCTGGTGCATCCACTCCAGATAAGGTTGTAGAAGATTCCCTTATTAAGGTATTTGACCTGAAGCGTGAAGAATTATTGCAAACTGTTTA 1391 0.4112 MAICPHFCRVPTARTDISLPENLWKIGHLRFRKTLSVRCSGDSSSSSVATDSDFDAKVFRKNLTRGKNYNRKGFGHKEETLELMNREYTSDIIKTLKENGYEYTWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPTERIWLTNEIIHNPTVNQRLEEMNVQNIPLDQGEKQFEVVDKGDVVILPAFGAAVDEMLTLSEKNVQIVDTTCPWVSKVWNVVEKHKKGDYTSVIHGKYAHEETVATASFAGTHVIVKNMAEAEYVCDYILGGEYNGSSSTKEAFLEKFKFAVSEGFDPDRDLIKVGIANQTTMLKGETEEIGKLLEKTMMRKYGVENVNDHFMSFNTICDATQERQDAMYKLVEEDLDLILVIGGWNSSNTSHLQEIAEERGIPSYWIDSEKRIGPGNRIAYKLNHGELVEKENFLPEGPITIGVTSGASTPDKVVEDSLIKVFDLKREELLQTV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva14g00302 463 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 108 455 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Bva14g00302 463 Gene3D - 332 462 - -
Bva14g00302 463 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 7 461 - -
Bva14g00302 463 CDD lytB_ispH 110 446 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Bva14g00302 463 TIGRFAM ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 110 447 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Bva14g00302 463 Pfam LytB protein 110 447 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Bva14g00302 463 Gene3D - 119 209 - -
Bva14g00302 463 Gene3D - 211 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva14g00302 Bva-Chr14 1544952 1548045 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva14g00302 K03527 - gmx:100818067 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva14g00302 14 1544952 1548045 Bva14g00302 14 1544952 1548045 ECH